AMCG00009788


Basic Information

Item Value
gene id AMCG00009788
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 46129110 ~ 46151694 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009788
ATGTCGCAGGATTCGCACCCGGGCCCGAGTGACAGGGACAGCCAGACAGTGTCCCAGGGACAACGAGCAGAGACAGGGACAGTCCTGGACAgcactgtgtctctgtccacCTCCACTCAGGGACACTCCTGCGGTACCTTGCTCTGCCTTTGTTTTGAGCTGATTGCTGTTGTGTGGGCTACGTGAGGCTCAGTGTGTGAAGGAGACACGGCAGGGCAGGGAGCCGGGCCAGGGGCCGGGCAGGACACGCCTCTCCACAGCTGGACACCACTGGATATTGGACTGGACAAAACTGGACACATCTAGacaactggactggactggaacTACACCCCAGGAAACAGCTGGACAGTACTGGACACTGCTGGACAATCTGAGACAACTGGACCTTCCTGGATGCTGCCGGACACATAGCTGAgacgcagacacacagacacacggtcCCCCACGGCCCCCTACCCGCTGTGAGTGTGCAAGGGCTCCCCCGCTGGACACAGGATGTCATCACATGTGAAGCTGCGCAGAGAGAAGGGCACCCTGGCCGAGTATGAGAcccaggtcaaagaGGTGCGCTCCCAGCTGTCGGAGCAGCTCAAGGTGCTGGACGTTCAGGTGGAGTTGCGCGTCCAGCTGCTCCAGGATCTGGGCGAGTTCCTTCGCCGCCGCGCCGAGCTGGAGCTGGAATATTCCCGCAGCCTGGACAAGCTTGCCGAGCGCTTCTCCGCCAAGATCCGGCACACCAAGGAACAGCACAACCTGCGgaaggACCAGAACCTGCTGTCCCCAGTGAACTGCTGGTACCTGCTGCTGAGCCAGACGCGCCGCGAGAGCCGGGACCACGCGGCACTGAGCGAGACCTGCGGCGCCAACCTGGTGCAGAGGCTGGTGCACACTGCGGAGGACACGGGCCGACTGGCCAAGAGGagcaaGGAGGTCGGGCTGCAGATGCAGGATGAGTTGCTGAAGGTCACCAGTGAGCTGCAGACTGCAACGAGGACGTATCACCAGTACCACACTGACTGCCTGAGCGCCGAGGGGAAGATGAAGGAGGCAGAGCGGCTGGAGGAGAGACAGATGGGCAAGTCAGGTGACCAGGGGCTCAGCCAATCAGGCACCGATGCCAAGCAGCAGCGTCGGAGCTCCGCCAAGAAGATGGAGAGACTGATCGAGAAGCGGCAGGGGAAGCTGCAGGAGGCACAACTGAAGTGTACGAAGGCACGGAACGACTACCTGCTGTGTCTCGCCGCTGCCAATGCAGCCATGAACAAATACTACCTACAGGATGTGTGCACCCTCATAGACTGCTGTGACCTGGGGTTCCACCTGTCCCTGGGGGGTGCCCTGCGGGGGTATCTGGGGGCGCAGCGGCGGGTGCAGCAGGCGCAGGAGGAGGGCCTGGGGGCTCTGGAGGTGGCCGTGGCGGCGCTAGACCCCAACAGCGACCAGAAGAAGATCATGGAGATGAACAACTCAGCCTTCTGTCTGCCCTTCAGATTTGAATACCAGCCACACGAGGGAGACcagGTGTGTGAGGTCAGTGCAGAGGCACAGGTGCGCCAAGAGTTGGTGGGTAGGTTCCAGCAGGTGCAGGGACGCCTGTCCTCCGTCACTCTGGAGACTGATGAGgttaaTAAGACTCTGAAGGCGACTCTCAAGGCTCTCCTGGATTCCATCAGCAGTGAGGACCACACCTCCCCTGACACCCCCCAGAGCGGCCAATCCTCAGAGCCCGTTCGGACGCCGGCCCCCGATGCCCCCGGCAACAAGTCCAGCATGGCCAAGAGGAGAGCCAATCAGCAAGAAACAGAGAGCTTCTACTTCAATAAAGTGAAGGAGTACCTGAGTGGCACCAGTCTCATCTCAAAGCTGCAGGCCAAACATGACGTCCTACAGGAGGCTATTGCCAAAGcTGAAGCCATCGACAGTGACCCCTCCAGGCTGCAGTCCAATCAGTCGGTGCGCGTGAGGCGGCCGCGGCCCTGTTCCCAGTACCACCACAAGCTCTTCACTGGAGACCTGCTCACCTTTGTGGAGAGCTCCGGGCAGCAgatccctctggtggtggaaagCTGCATTCGCTTCATCAACCTGCACGggCTACACCATGAGGGGATATTCCGGGTGCCCGGCTCACAGACTGAGGTCAACGAGATCAGGAACGCCTTTGAGAGGGGCGAGGACCCCCTGACAGACTCGCAAGGTTGCCATGACATTGACTCGGTGGCCGGGGTGCTGAAGTTGTATTTCCGGGGGCTGGAGACGCCGCTATTCCCTGGGGACAAGTTCACTGAGCTGATGGAGTGTGTCCAGGTGGAGAACTCTCTGGAGAGGGCCTGCTGCATTAAGAGGGTGGTGCTGTCGCTGCCACGCCCCGTCCTCATTGTCATGAGATACCTGTTCGCCTTCCTCAACCATCTGTCTCAGTACAGTGATGAAAACATGATGGATCCCTATAACCTGGCCGTGTGTTTCGGCCCCACGCTGGTCTGCGTGCCGGGGGGGGTGGACGCTGTGTCTGTCCAGGCGCAGGTCAATGCAATGGTCAAGACCATCATCCTGCACCACGAGACTGTGATGCCCCCCTTGGCCGAGTTGCCCGGCCCCCTGTACGAGAAGTGCATGACTCTGGACGACTACTGTGACAGTCTGCTCCCTGAGCCCATCGCAGAAGAGGGGGAGGCCGACCCTGACGCTCTGCCTGACCCCCCGCCCAGTGAAGATGaggCGGAGCAGTGTGAGGCTGTAGCCATGTTTGACTATGTCGGCCGCTCACCCCAGGAGCTGTCATTCAAGCAGGGAGACACACTCCTCCTGCACAGCAAGGCCTCCAGCGATTGGTGGAGAGGAGAACTGGGCGGAGTCAAGGGCATCATACCCAACAAATACATCAGTGTCCCAGAGAGGACGGAGCGGCGGTTGGAGCTGCGGGGGCGCCGGGAGGAGGGAAAGACTGCCAGCGTGACCAACCTGTCAGAGGAGCCGGCGGGGGAGCATAGCACCCGCATGCGGGTGAATAGTGACAGCGCTTCTCTGCCCAGGAAGCGCAGCGGCAGCAGCCCAACCCGGAAGTTAACGTCTCCCTTCGGGGACCGCCTGctgctccctgccccccccccacccgcgCAAGGCCGCCCCTTCCACCGGGGTCCCGCCGACAGTGACCGgcTGCAGGAGCGTAGAAACACTCTGGAGAGTTTGGGGATTGGTGTCCCCCATGCACGGCATGCCGTCACCGCAGAGAGGAGCAGCGCGCAGCCAGACAGACCCCCCGTGGAGCTGGACAAGAACGTCACAGTGCAGATGAACTCCGTGTTCCGGGAGCTGATGTCGCTGCGCCAGGCGCCACCCCCCGAGGGAGAGCGCTGTTCAAAAACACGCCAGAGCAGCAcgactgagggagggaggggggagggaagAGGAAAGAGCTAggaggagtgagggagagatAGGAAAAGAGAAGGAGGGATGTAGAGAGATAGgatgagagaaagaggaggagtgagagagagagagggaagaggagtgagggagagagcaaTGGAGATGGAGGtagagggagaggtggagagagagaaagaggaggagtgagggagtgagggagagat

Function

GO: NA

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009788 True 3605 mRNA 0.61 25 46129110 46151694

Neighbor

gene id symbol gene type direction distance location
AMCG00009783 NA coding downstream 76214 46033114 ~ 46052896 (-)
AMCG00009779 LOC102797708 coding downstream 223772 45897094 ~ 45905338 (-)
AMCG00009774 NA coding downstream 259375 45865900 ~ 45869735 (-)
AMCG00009775 wnk3 coding downstream 317226 45801402 ~ 45811884 (-)
AMCG00009777 NA coding downstream 329162 45782243 ~ 45799948 (-)
AMCG00009787 NA coding upstream 10577 46162271 ~ 46166818 (-)
AMCG00009790 naa10,LOC106572706,LOC106567016 coding upstream 18071 46169765 ~ 46172501 (-)
AMCG00009789 NA coding upstream 25556 46177250 ~ 46182945 (-)
AMCG00009791 NA coding upstream 35489 46187183 ~ 46204678 (-)
AMCG00009792 sps2 coding upstream 68541 46220235 ~ 46223357 (-)
G59236 NA non-coding downstream 16429 46061493 ~ 46112681 (-)
G59202 NA non-coding downstream 165055 45908581 ~ 45964055 (-)
G59191 NA non-coding downstream 220968 45907254 ~ 45908142 (-)
G59099 NA non-coding downstream 365970 45759711 ~ 45763140 (-)
G59090 NA non-coding downstream 380652 45747557 ~ 45748458 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other downstream 371159 45748676 ~ 45757951 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other downstream 486366 45637747 ~ 45642744 (-)
AMCG00009755 NA other downstream 663733 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 803055 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 851513 45251637 ~ 45277597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022268 arhgap4b coding NC_007134.7 CM002907.2 18615992 ~ 18668836 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_05318747_05341451 ARHGAP4B coding CI01000001 null 5317514 ~ 5341773 (-)