CI01000001_05295894_05308912 (SSR4, SSRD, IKBKG)


Basic Information

Item Value
gene id CI01000001_05295894_05308912
gene name SSR4, SSRD, IKBKG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5295523 ~ 5308986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05295894_05308912.mRNA
ACCATGATTGCTGCTGACATGGAATTAAAAAATAATTTAAAATAAATATATACTGATATTTAATATACTTAGCAATGAATCATAAACAACTGGAAAGGATCATGGTCCAGCCGCAGCCATCAGGTGGTTGTACTCTGCAGTGGGAGCTGACTGGAGAGGAGACTGTAGGTGCTGGAGGTCAAGGGTCACTGATGGCCAGTTCACAGGGGTCTCTAAGGGTCCCTCCTGAATTAGCGGGAAATGAAGTGGTCCATAGACTTATAACAGATAATCATCAGCTACGAGAGGCTCTGAAGCGAAGCAATGATGCCCTCAAAGAGAGATGTGAAGAGATGGAGGGGTGGCAGAGGAGGTCGCGGGAGGAGCGAGAGTTCCTGAGCTGTAGATTTCGTGAGGCCAGAGCTTTAGTGCAGCGACTGGCGCAGGAAAACCAGAGCCTGTTAGGACAGCTCAACCACAGCATCAGTCCATGTGTCGGCACCTCTAAAGAGGCTGGAACTCAAGGCCAGGACCAAGAGCTGAAGTGCACCAATGCAGAGAAGAATGTCCTCATGGACGCACCAGAAGTATTAAATGAAGCTGTACTGACAGACCGAGCTGAAGGAGACACTGACAGACACACAATGCCTCAAAGTTTGCCTGCTGAGGGCTCTAATGAATTTCTTAAACTGCTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGGATGAGGGCGCTGAAGAGGAGGAACGAGGAGCTGGAGAAGGAGAAAGCAGAGAGTGAGAAAGAGAGAGAAAATCTCCTCGCCACCCTGGAGCAGTTACGCTCCAGAGTCACTCAGAATGTTACTGAAGAGTCAGTCCAGCAGGCATGTGCGCTCACCGTTCCTGCAGAAAGCTCTCACTTGGCTAAACTAACTGAGCAGCTTCAGGCTACGCAAGGCAGGTACAGGGAACTTCAGGAGAAGCTGGACTGTCTTCAGAAGAACTCTGCTCAGAGGGACAGAACTGAGGCTCTGCTCAAACAGAAAGAAAAGGACTTTGTTCAGCTGACAAAGGATAGTGAAGCTCTGAGAGCTCAAGTCACGTCCCTTCTCGGTGAATTGAATGAACGACAAAACTGGCTGGAGAAAAGTGAAGCAGAGAAACGAATATTAGAGGATAAATTGGGCAGGAAGACCGAACGCCTGCAGACTTTAGAGAGAGACATGGAGCAGCAGAAGAAGCAGCACAGTGTGACAGTGGACAATCTTTTATTGCAGACACAGAACCTAGAAACTGCACTGAAGAACGAGAGGCTCGTCATAGTGGAAGAGAGGAGGAAACTGGCCCAGCTCCAGCATGCATACACATGTTTGTTTCAGGATTACGACAACAAACTTAAAAGTGAAAAGCAAGCCAATCACAGGAGTGGAGAGGCAGATACTCTAGCTAACAGGTTAGCAGAGGCTGAGAAAGCTTTGGCCCTGAAACAGGATCTCATCGATAAACTCAAGGAGGAAACGGAGCAGCTGAGAGCTACATTAGAAACTATACCAGTGCTGAATGCTCAGGCAGAGATCTATAAGATGGACTTCCTGGCTGAGAGGGAAGCCAGAGAGAAACTCAATCAAAAAAAAGAAGAGTTGCAGGAGGAGCTGAATAAAGCACTATTTGAGTTAGACAGACTTAAGCAAGAGGGAACCTCACGAGCTCGCATTGAGGAGATGCAACAGAGACACTTGGAGGACTACAGGCCTCGACCACCAGCTCCAGCTGGAGCAGCCATGTTCAACCCAGCCCAGCCTCCATCTTCACGAAGAAGAGATGATGATCAGGAAGAGCTTCCTGATTACCGCTGCCCCAAATCTGAGACTTGCACAGACCCAGTCATTTCTCCGTCTTCATACACGACCACAGACGCGCTCATCTCCTCCGAGACCGTGTTCATCGTTGAACTGAGTCTGGCCTGTGCAAACGGAGCTCAGAGTGTTGCCCTCTATGCAGATGTCAATGGCAAACAGTTTCCTGTGACCAGAGGCCAAGATGTTGGCAAATACCAGGTGTCATGGAGTGTTCCTCATAAGCAGGCCAGCTCTGGCACATATCAGGTCAAATTCTTTGACGAGGAGTCTTACAGCACTCTAAGAAAGGCTCAGAGAAACAATGAAGATGTTGATTCTATCAAGCCTTTGTTCTCTGTCAATGTGGATCACAGGGGTGCATGGAGTGGTCCCTGGGTGTCCACGGAGGTCTTGGCTGCTCTGATTGGCATTGTGGTTTACTACCTGGCCTACAGCACCAAAAGTGCTATCCAAGCTTGAGATGAGAAGAAAAGTCTGTTTTCCACCATACTGGTCAATCTGGTCTTCAGGCATTCCTTATTCTGCCATTTTAATATGCAGAGTTTATTTTGCCATGGACACCTTGGCTGAAACAAGAGATTGGTTTGTTGTAGAGCTTGAGTGAAAGTATTGGTATGAACAATAATTATAACAGCCAAAGTGGTGTTTTTTTTTTTTTTCCTAACAGACAGTCAAGAATTTAAGACGTAATATTTTTCATCTATGCTATCAATATTAAACCTCAAAAGGTCAAAAACTGAGGTGAATTATCTGTGACGCACCATCATAGTCCAGTTCTGTATTTTGAAATGTCCCAAATATCAATGAAATTCATTGAATATGGGAATAAA

Function

symbol description
ikbkg Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within I-kappaB phosphorylation and positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be part of IkappaB kinase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in periderm. Human ortholog(s) of this gene implicated in Behcet's disease; Bloch-Sulzberger syndrome; immunodeficiency 33; and learning disability. Orthologous to human IKBKG (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma).
ssr4 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05295894_05308912.mRNA True 2650 mRNA 0.47 20 5295523 5308986

Neighbor

gene id symbol gene type direction distance location
CI01000001_05288832_05293421 SEPHS2, SPS2 coding downstream 2102 5286756 ~ 5293421 (-)
CI01000001_05205733_05220435 FAM120C coding downstream 73908 5204576 ~ 5221615 (-)
CI01000001_05191382_05196348 HSD17B10 coding downstream 99175 5191059 ~ 5196348 (-)
CI01000001_05155976_05158742 NA coding downstream 136781 5155921 ~ 5158742 (-)
CI01000001_05062950_05065565 NA coding downstream 229958 5062297 ~ 5065565 (-)
CI01000001_05313109_05313728 NA coding upstream 4070 5313056 ~ 5313728 (-)
CI01000001_05318747_05341451 ARHGAP4B coding upstream 8528 5317514 ~ 5341773 (-)
CI01000001_05355269_05356224 NA coding upstream 45725 5354711 ~ 5357715 (-)
CI01000001_05387081_05398706 TRPC4AP coding upstream 77441 5386427 ~ 5398706 (-)
CI01000001_05403970_05409286 NSFL1C coding upstream 94984 5403970 ~ 5409286 (-)
G16461 NA non-coding downstream 44017 5232386 ~ 5251506 (-)
G16459 NA non-coding downstream 105881 5189281 ~ 5189642 (-)
G16400 NA non-coding downstream 216982 5078342 ~ 5078541 (-)
G16390 NA non-coding downstream 236596 5058690 ~ 5058927 (-)
G16388 NA non-coding downstream 241433 5051494 ~ 5054090 (-)
G16497 NA non-coding upstream 41682 5350668 ~ 5350915 (-)
G16509 NA non-coding upstream 105264 5414250 ~ 5414495 (-)
G16512 NA non-coding upstream 109955 5418941 ~ 5419396 (-)
G16514 NA non-coding upstream 150806 5459792 ~ 5460018 (-)
G16515 NA non-coding upstream 153020 5462006 ~ 5462271 (-)
G16462 NA other downstream 65938 5222777 ~ 5229585 (-)
G16332 NA other downstream 337681 4950689 ~ 4957842 (-)
G15736 NA other downstream 494128 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 567316 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 817378 4468209 ~ 4523431 (-)
G16664 NA other upstream 1035118 6344104 ~ 6347955 (-)
G16753 NA other upstream 1275494 6583054 ~ 6615589 (-)
G17789 NA other upstream 1528539 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1627091 6931621 ~ 6937231 (-)
G17911 NA other upstream 1942325 7251311 ~ 7267952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022264 ikbkg coding NC_007134.7 CM002907.2 18574221 ~ 18597709 (-)
striped catfish (Pangasianodon hypophthalmus) G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding NC_047610.1 CM018556.1 11530704 ~ 11533297 (-)