RNA id: TCONS_00043957


Basic Information

Item Value
RNA id TCONS_00043957
length 1157
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_022265
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18603187 ~ 18609475 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTGGTGCAGACACAGAGTGAGGTGCAGACGTCCCGTTCACGCTTTCTGATGTCCAGTAATACTTTAATACAGAGCACATATTCAATTGTTAGATGTGGATGACATGACAGTTTATGGCGTTTGATGGTGTCTGCCAAATAGATCTGAATAGACATACATTGCTGCTGAAGTTACTTTTGTTGACTTGCACAGGattactttttgttttgtatacCGGAGCTGTTGGATAGGTCCAATATGATGTCAGACGAGTATTTGGTGGAATGTAACATTAATGACGAcgatgaggaggaggatgaagaggaaGATTACGTTGTGAAGAAGATCTACgagtctcctcctcctcctccacagtTTTCCTCAAGCACATCAGTAGACATCAGGGATCCGTGCGGCATCAACAAACACTTGAAGGTAGAGTTCAGCGATGTTTTGGCGGAGCCCGCATCCACACGCAGCTATGACCGGGTGTGGGTTTACAGTGGCATCGGCTTCGAGTCCGCGCGGCTGTGGAGTTACCGCTGCCTGAGCGCGATCTGTGCGGTTCCGCTCTCCTGTCTCTGCGGCTGCCTGTTCGCCCTGCTGGCCTGCATGCACATCTGGTGTGTAATGCCGTGTATTCAGGTGTGCCATTCCTGCCTGCCCTGTGTGAGGTCACTGTGGATGAGTTTAGTAAACATCTTCATCGCTCCGCTCTTAACATCTGTGGCTCACTGTTGCAGTGGAGTTTATGTGCTTTTCTCCAAAGAGTGAACAAACACGAGGAGTTTGGGGAAGCTTGTAAAACTGTCCatcacttaaaaacaaacaaaacatcaacCCTGCTTTTGTGAAGTTACaaaacaactgtttaaaccaTTCAAAGAAGGGGATTACATGTTAttatatagatttgtttttgatAATCTATTACATGTTAAATGATCTTTGGTACACATTTTTGTGTGATAAAATTTGCATGTGCTTTAAAGTATGTCCAACATGCAGATAATAACAGCCTCTTTTTTCATATGttctgattgttttgttttgctgtttgataTGTGAAATGTTCATTGATTATATATGAATCCAGATTAtttgaaacaaacacacatttgtaTTGTATCTACAAAATTTACAATAAACACTAAGAGGGATTAAACACCAAATAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070836 caveola assembly biological_process
GO:0042383 sarcolemma cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005901 caveola cellular_component
GO:0005925 focal adhesion cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1272 Predicted to enable molecular adaptor activity. Predicted to be involved in caveola assembly; cell differentiation; and regulation of cytosolic calcium ion concentration. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Predicted to colocalize with caveola; focal adhesion; and sarcolemma. Is expressed in liver; myotome; and somite.

Ensembl:

ensembl_id ENSDART00000104524

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043952 lncRNA downstream 24665 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00043951 lncRNA downstream 30542 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00044984 lncRNA downstream 210897 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00044983 lncRNA downstream 218019 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044982 lncRNA downstream 218020 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044727 lncRNA upstream 259742 18869217 ~ 18870954 (-) False XLOC_022272
TCONS_00044985 lncRNA upstream 259941 18869416 ~ 18884382 (-) False XLOC_022272
TCONS_00043972 lncRNA upstream 295199 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00044986 lncRNA upstream 295199 18904674 ~ 18913159 (-) False XLOC_022273
TCONS_00043973 lncRNA upstream 302086 18911561 ~ 18913072 (-) True XLOC_022273
TCONS_00043956 mRNA downstream 5478 18574721 ~ 18597709 (-) True XLOC_022264
TCONS_00043953 mRNA downstream 5483 18574274 ~ 18597704 (-) False XLOC_022264
TCONS_00043955 mRNA downstream 8162 18574719 ~ 18595025 (-) False XLOC_022264
TCONS_00043954 mRNA downstream 8167 18574719 ~ 18595020 (-) False XLOC_022264
TCONS_00043949 mRNA downstream 30502 18569291 ~ 18572685 (-) False XLOC_022263
TCONS_00043960 mRNA upstream 6517 18615992 ~ 18668836 (-) False XLOC_022268
TCONS_00043961 mRNA upstream 7687 18617162 ~ 18668836 (-) True XLOC_022268
TCONS_00043962 mRNA upstream 93041 18702516 ~ 18707568 (-) False XLOC_022269
TCONS_00043963 mRNA upstream 93043 18702518 ~ 18707494 (-) False XLOC_022269
TCONS_00043964 mRNA upstream 93529 18703004 ~ 18707418 (-) True XLOC_022269
TCONS_00043945 other downstream 220636 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043939 other downstream 539888 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 920255 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 1426969 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 1556803 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043958 other upstream 541 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 1652 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 150067 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043968 other upstream 259941 18869416 ~ 18870756 (-) False XLOC_022272
TCONS_00043969 other upstream 261115 18870590 ~ 18884382 (-) False XLOC_022272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05313109_05313728.mRNA True 461 mRNA 0.52 3 CI01000001 5313056 ~ 5313728 (-)