RNA id: TCONS_00043965


Basic Information

Item Value
RNA id TCONS_00043965
length 3210
RNA type polymorphic_pseudogene
GC content 0.45
exon number 19
gene id XLOC_022270
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18759542 ~ 18777957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAACGTCACGACGTCAGAGGAACAGCAATGGCGACAAGAGGCCCTGGGTTTTCTCGCACCCAAACAAGACGAGGAAAACCATGCAAAAACATCTTTCATAAAATTCGACAAGGCCAAGTCACCGGCGAGGGGTTAACTAGAGGATCACAGGTTCCTGTGGCTTTGTTGGAGGAGAGAGACAAAAGAGCTCAATGGCAGGGGATTCCAGTGTTACTAAGAAGGCTTCATAAGAGCAGCCATCCTAACAGCGATCTCTCCAAGATTCACAGCATAGTCATGGAGCTGTCGTCATTACTGTCCATGGAGGCCATTTCATTTGTCACAGAGGAGCGGAAGATGCCACAGGAGTCCATTTCGCCTAATACATATACATTTGACTTGTTTGGAGGAGTTGATTTGTTTATAGAGATTTTAATGCGGCCGACACTCACAATACAGCAAAACACACCCACAATGAGTGATGATCTCATTAAGGATTGTTTAAGTGTACTGTACAACTGCTGTATATGTACAGAGGGCGTTACAAAAAGCCTTGCAGCGAGGGAGGATTTCGTTATGTACCTGTTCACTCTCATGTCCAACAAAAAAGTTTTCCTACAAACTGCCACTCTTATAGAGGACATTCTGAGCGTACGAAAGGAAATTATCCAGCTGGAAGAAATTCCCAATTTGGACAGTCTGGTTCAGAGCTTCAACCAGCAACAGCTTGCCAACTTTTGTCGGATCCTGTCAGTCACCATATCAGAGCCGGACGTGGGTGTTGATGACAAGCACACTCTTCTAGCCCGCAGTACCCAGCAAAAAAACAGCACATGTCCATCACACGCTGAGAACAACCAGGTGGCTCTATTGAACATCCCAGGTTTCATTGAGCGCCTTTGTAAACTCGCCACAAGGAAAGTTACGGAAGCGGCGGATGCCTCTGCCAGGCTGGAGCTGGAGGACTGGCACAGCTGGCTTGACAATGCACTGGTGCTGGACACTCTCATGCAGCTGGCAATAGAGGAGGCAGAGCAGAGCAGTACAGAGTCATCTGATGAGAGCTCTCTGTCCTCCAGTCCACTCAGACACAGACTGCCTCAGTCTATGAAGATAGTGCACGAGATCATGTATAAAGTGGAGGTTCTCTATGTgctgtgtgtgctgcttatgGGCCGACAGCGAAATCAGGTTCACAGAATGTTGGCAGAGTTCAAGTTAATTCCAGGACTCAATAACCTATTTGATAAGTTAATCTGGAGGAAGCAGCCATTTGGTCATATTCTGCATCGGCAGAACCAGAGCTGTGACTGCAGTCCAGAGATCTCCTTCAAGATTCAGTTCCTCAGGCTCCTGCAGAGCTTCAGTGATCATCACGAGAATAAATATCTTCTACTAAGTGGACAGGAGCTGAATGAACTGAGTGACATCTATCTGAATGCTAACATCTTTGAAATGGAAGCACTGAACAACACAGACAGGAATCTTGTGTGTGATGGTAAAAAAGGTCTTCTTACACGGTTAATCTCAGTCATGAAGAAGGAGCCAATTGACTCTTCATTCAGGTTTTGGCAGGCAAGAGCAGTGGAGAGCTTTTTGAGAGGAACGCCATCATATGCTGATCAAGTGTTTCTTCTCAGAAGAGGCTTATTAGAGCACATTCTCTATTGCATCATTGACAGTGGCTGCAAGTCCCATGACGTTCTTCAGAGTTACTTTGACTTACTTGGTGAGCTCATGAAGTTCAACATCGATGCCTTCAAAAGATTTAACAAATACGTCACCACTGAGGAGAAGTTTCAGATGTTCCTGACTCAGATCAACAGCTCTCTGGTGGACTCCAACATGCTGGTGCGATGTATCGTCTTGTCTTTGGACCGCTTCGAGAATGAGACTAATGACGTGAAAGTGGTTGAAGTGTTTTCAGAGTGCCGCCTCTTGTCCTACATGGCTTAGGTGGAAAACAGGTTGCTCTTCCTTTTTTACAACTGATCAGCATCATCAATGTACAAACCCTCACTCAGGAGAATGTGAGCTGTCTGAACACCAGTCTTGTGATTCTGATGCTGGCGAGGAGACGGGGCAAGCTGCCTCTGTACCTAAGCGCTCTGCGGGAGAAGGAGTATTCGGAGAAATACCCCGGCTGCCTGCTCAACAACTTCCACAACCTGCTGCGCTTCTGGCAGCACCACTACCTCAACAAAGACAAGGACAGCACCTGCCTGGAGAATAGTTCTTGTATTCCCTTTACATACTGGAAGGAGACCGTCTCAGTGCTGCTGGGGTCTGGTAGAAGCTCTCGCTGTGCCATTGCCACCTATATCGATGAACCCTACAGAGACCTGGACAGAGACTTCATGGAGCTTTCACTAGAGACTGAGAGGACTCTCTTTACATCACAAACACATCCTGCCTGCGGTTATAACAGCTAGTCCATTCAGATTCATTGCGGATTTGGTGTGTGTGAAGTTATATTTCGAGAGTTTTGatctgcttgtgtgtttgtgtgtacaggtttatgtggtttacagggatacaaagttgtataatgacatgggtatgacctattTGTACTCCTATTAAATAATGTCGCTGTAATGATAGCACCTTACTGGGACATACTTAATGTCCCTGTAATTTGAAAGTGCTTAAAATCCTACTTTACGGGGTCTGTTCCATTCAAAATTGTtcatgtttcctgtgagggttgggttttgcGGTAGAGCCATACAATAAgggttttttactgtataaaaggCATTACGCCTATGGGGAGTCCCTGGAAACCatgtatacaagtgtgtgtgttggCTCAAAGTATTACACGTGAATTGAATGTGCTTGGGAATAAGTAATGCCACTTTTTAGTTGTGTGTGCAATGGCACTAGAGTCCGGGTGTTTTCAGCTGGCGAATAGAGTTTTTACAGCTGCCTTGTTTTTCTAGCGCTGGGTTTTCGCCTCCTCTGGGTTGAGTTTTCAGTGAACTGTCATTAGTGGTCACTTGATGAGCAGGATCCTGGAAATTGTCAGGAAGAGCCTCACTGCCCATTGTccctcactgcaaaaaaaaagtaaaatcaggGACATCCTAATGTCTGATTGTTTGGTTGGCTTAGTTTACATACTgcctgtatatttatgtatatgtagtTCTCACTTCAATTGTACTTTCAGCCTGAAATCACAGTGACTACACAaagtaacaaaagaaaataaataatttgtttt

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000330-2 Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Orthologous to human TRPC4AP (transient receptor potential cation channel subfamily C member 4 associated protein).

Ensembl:

ensembl_id ENSDART00000169180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043952 lncRNA downstream 181020 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00043951 lncRNA downstream 186897 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00044984 lncRNA downstream 367252 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00044983 lncRNA downstream 374374 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044982 lncRNA downstream 374375 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044727 lncRNA upstream 91260 18869217 ~ 18870954 (-) False XLOC_022272
TCONS_00044985 lncRNA upstream 91459 18869416 ~ 18884382 (-) False XLOC_022272
TCONS_00043972 lncRNA upstream 126717 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00044986 lncRNA upstream 126717 18904674 ~ 18913159 (-) False XLOC_022273
TCONS_00043973 lncRNA upstream 133604 18911561 ~ 18913072 (-) True XLOC_022273
TCONS_00043962 mRNA downstream 51974 18702516 ~ 18707568 (-) False XLOC_022269
TCONS_00043963 mRNA downstream 52048 18702518 ~ 18707494 (-) False XLOC_022269
TCONS_00043964 mRNA downstream 52124 18703004 ~ 18707418 (-) True XLOC_022269
TCONS_00043960 mRNA downstream 90706 18615992 ~ 18668836 (-) False XLOC_022268
TCONS_00043961 mRNA downstream 90706 18617162 ~ 18668836 (-) True XLOC_022268
TCONS_00043966 mRNA upstream 12701 18790658 ~ 18805655 (-) False XLOC_022271
TCONS_00043967 mRNA upstream 16732 18794689 ~ 18805567 (-) True XLOC_022271
TCONS_00043974 mRNA upstream 175913 18953870 ~ 18981595 (-) False XLOC_022275
TCONS_00043975 mRNA upstream 175913 18953870 ~ 18982499 (-) True XLOC_022275
TCONS_00043976 mRNA upstream 208058 18986015 ~ 19051869 (-) False XLOC_022276
TCONS_00043959 other downstream 147121 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043958 other downstream 148532 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043945 other downstream 376991 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043939 other downstream 696243 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 1076610 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043968 other upstream 91459 18869416 ~ 18870756 (-) False XLOC_022272
TCONS_00043969 other upstream 92633 18870590 ~ 18884382 (-) False XLOC_022272
TCONS_00043970 other upstream 92860 18870817 ~ 18898522 (-) True XLOC_022272
TCONS_00043971 other upstream 126717 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00043982 other upstream 370629 19148586 ~ 19153327 (-) False XLOC_022279

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05387081_05398706.mRNA True 2982 mRNA 0.46 19 CI01000001 5386427 ~ 5398706 (-)