XLOC_022277 (pard6b)


Basic Information

Item Value
gene id XLOC_022277
gene name pard6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19066696 ~ 19103855 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043978
ATGAACAAAAACCACCGAGTGCCGAGCAACCGAACTCTGAACGCCGTGGAGGTGAAGAGCAAGTTTGGAGCAGAATTCAGACGGTTCTCTTTGGACCGGTCCAAGCCGGGACGATTTGATGAATTCTATGGCTTACTACAGCACGTGCACCGGATCCCTAATGTGGACCTGCTTGTGGGTTACGCCGATGTTCACGGAGACCTGCTGCCAATCAACAACGATGACAACTATCATAAAGCAATCTCCATGGCAACGCCCCTGCTCCGCCTCTTTTTACAGCGAAAAGagGAGGCCGATTACTCAGCGTTCGGCACAGACACTGTGACCCGTAAGAAGACCCCGGCGGCCCTCGCAGCAGTCCTCCTTCGGCCGGACACCAACAAGAAGAAGCCTCCAATCATCATCAGCCTGCCCAAAGACTTCCGCCCAGTGTCCTCCATCATCGATGTGGACATTCTTCCAGAGACTCACCGCCGCGTCCGTCTCTATAAACATGGCCAGGAGAAACCTCTGGGCTTCTACATCCGGGACGGATCCAGCGTTCGTGTTACACCCCAAGGCTTGGAGAAGGTCCCAGGCATCTTCATTTCCCGCATGGTCCCCGGAGGCCTGGCGGAGAGCACGGGACTGCTGGCCGTCAATGATGAGGTGCTCGAAGTCAATGGCATTGAGGTGAGCGGCAAGTCGTTGGACCAGGTAACGGACATGATGATCGCTAACAGCCACAACCTCATTATAACGGTCAAACCGGCCAATCAGCGCAATAACATAGTACGAAGCAGCGGCGGTGGGGCCACATCTGGCAGCTCAGGACGATCTTCAGACAGCAGCACCAGCTTCCATGGTTACTCCGTGCCAGGCTCCACGTCCATGACTCCTTCTCATATTATACAGAACTTTGAGCCGGATGAAGAGAGTGAGGACGAGGAGGATCTGGTGATCGAGGCGGATAGAGGGGCCAAACTCATCCCGCCAGCAAAGGTTCGAGCGACCGCCAGCTCCAGCATGCCTGTTCTGCCCAGATACGAGCCTCACCTCGACCTACGGCCCTCAAACGGTACAATGGCGACCAGCACAAGCGTAGGGTCTCTGAACGCCCACGAAAGGCGTAATCTAGAAGAAGACGGAACAgtcattacactgtaa

Function

symbol description
pard6b Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to act upstream of or within cell division. Located in apical plasma membrane. Is expressed in otic placode. Orthologous to human PARD6B (par-6 family cell polarity regulator beta).

GO:

id name namespace
GO:0060341 regulation of cellular localization biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0007098 centrosome cycle biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005080 protein kinase C binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-133 Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to act upstream of or within cell division. Located in apical plasma membrane. Is expressed in otic placode. Orthologous to human PARD6B (par-6 family cell polarity regulator beta).

Ensembl:

ensembl_id ENSDARG00000003865

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043978 True 1146 mRNA 0.55 3 19066696 19103855

Neighbor

gene id symbol gene type direction distance location
XLOC_022276 arfgef2 coding downstream 14827 18986015 ~ 19051869 (-)
XLOC_022275 bcl2l1 coding downstream 84197 18953870 ~ 18982499 (-)
XLOC_022274 NA coding downstream 124646 18929913 ~ 18942050 (-)
XLOC_022273 NA coding downstream 153537 18904674 ~ 18913159 (-)
XLOC_022272 NA coding downstream 168174 18869217 ~ 18898522 (-)
XLOC_022278 si:ch73-381f5.2 coding upstream 32060 19135915 ~ 19140781 (-)
XLOC_022279 ebp coding upstream 43273 19147128 ~ 19153408 (-)
XLOC_022280 oard1 coding upstream 116526 19220381 ~ 19225709 (-)
XLOC_022281 guca1b coding upstream 123441 19227296 ~ 19230627 (-)
XLOC_022282 klhdc8b coding upstream 146113 19249968 ~ 19434199 (-)
XLOC_022270 trpc4apb non-coding downstream 288739 18759542 ~ 18777957 (-)
XLOC_022267 CT027756.1 non-coding downstream 454275 18611127 ~ 18612421 (-)
XLOC_022283 CR388168.3 non-coding upstream 204941 19308796 ~ 19308910 (-)
XLOC_022284 NA non-coding upstream 363685 19467540 ~ 19472619 (-)
XLOC_022291 CR352234.4 non-coding upstream 609240 19713095 ~ 19713228 (-)
XLOC_022292 NA non-coding upstream 718579 19822434 ~ 19831739 (-)
XLOC_022294 CT574579.1 non-coding upstream 803973 19907828 ~ 19907944 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05544032_05558747 PARD6B coding CI01000001 null 5543414 ~ 5558747 (-)