RNA id: TU18494


Basic Information

Item Value
RNA id TU18494
length 456
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G16512
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5418941 ~ 5419396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATCCTTTAAGATATTTTTGATGAAATCCAAGGTTTTTTTTATCCCCCAAAGAAAGCAACGTAATTACCACATTCAAGGTCCAGAGAAGCAGAAAAAACATCCGTGTTTTACGTCCAAACGCCGGCTCAGGATTGGCCGACACCGTTCATGTGAGCACAACGACATATGCGTGTGATGCTGACACAGGAGCCGACCAATATAGGAGCCGCTGTTCTCACGTAAACCCAGAAGCGCTGCACTGCATTCACTGCGCCAACTGCATAGAAGACTGACAGGGAAGAGGAAAAATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTTCACACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCGCTGTAGTCACATTGACTATTTTAACAATGTCTTTACTACTTTTCTGGACCTTGAATGTGGTAATTTCGTTGCTTTCTATGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18491 lncRNA downstream 4446 5414250 ~ 5414495 (-) True G16509
TU18479 lncRNA downstream 68026 5350668 ~ 5350915 (-) True G16497
TU18439 lncRNA downstream 167435 5232386 ~ 5251506 (-) True G16461
TU18436 lncRNA downstream 229299 5189281 ~ 5189642 (-) True G16459
TU18352 lncRNA downstream 340400 5078342 ~ 5078541 (-) True G16400
TU18496 lncRNA upstream 40396 5459792 ~ 5460018 (-) True G16514
TU18497 lncRNA upstream 42610 5462006 ~ 5462271 (-) True G16515
TU18500 lncRNA upstream 48722 5468118 ~ 5468464 (-) True G16518
TU18506 lncRNA upstream 153187 5572583 ~ 5573003 (-) True G16524
TU18515 lncRNA upstream 167683 5587079 ~ 5587354 (-) True G16531
CI01000001_05403970_05409286.mRNA mRNA downstream 9655 5403970 ~ 5409286 (-) True CI01000001_05403970_05409286
CI01000001_05387081_05398706.mRNA mRNA downstream 20235 5386427 ~ 5398706 (-) True CI01000001_05387081_05398706
CI01000001_05355269_05356224.mRNA mRNA downstream 61226 5354711 ~ 5357715 (-) True CI01000001_05355269_05356224
CI01000001_05318747_05341451.mRNA mRNA downstream 77168 5317514 ~ 5341773 (-) True CI01000001_05318747_05341451
CI01000001_05313109_05313728.mRNA mRNA downstream 105213 5313056 ~ 5313728 (-) True CI01000001_05313109_05313728
CI01000001_05436238_05437581.mRNA mRNA upstream 16409 5435805 ~ 5437655 (-) True CI01000001_05436238_05437581
CI01000001_05437862_05438101.mRNA mRNA upstream 18307 5437703 ~ 5438101 (-) True CI01000001_05437862_05438101
CI01000001_05483661_05484398.mRNA mRNA upstream 63691 5483087 ~ 5484725 (-) True CI01000001_05483661_05484398
CI01000001_05502863_05504638.mRNA mRNA upstream 81874 5501270 ~ 5505052 (-) True CI01000001_05502863_05504638
CI01000001_05509301_05539080.mRNA mRNA upstream 88580 5507976 ~ 5540558 (-) True CI01000001_05509301_05539080
TU18440 other downstream 189356 5222777 ~ 5229585 (-) True G16462
TU18272 other downstream 461099 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 617546 4800901 ~ 4801395 (-) True G15736
TU17476 other downstream 690734 4614175 ~ 4618357 (-) True G15639
TU18669 other upstream 924708 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1165084 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1418129 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1516681 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU20141 other upstream 1831915 7251311 ~ 7253254 (-) False G17911

Expression Profile