RNA id: CI01000001_05205733_05220435.mRNA


Basic Information

Item Value
RNA id CI01000001_05205733_05220435.mRNA
length 5259
RNA type mRNA
GC content 0.50
exon number 17
gene id CI01000001_05205733_05220435
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5204576 ~ 5221615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACGAAAATTAAAACATTTAAAAAAAAAAAAAAAAAAACGTTAAATGTGTTGAAAATGTTGTGTTAAACATAATTACTATCTCTCTTTTCTGCAGCGCACCTAGTATTCTCTTGAGGTCAACTGGCCCTAAACTGTTTATTCCCACACAATGTGATAACTTCAGAGATCCTAATCTAGTTTTTCCAACTGAACCAATTTTCTTTATCAACTTTTGAATGAACCGTTCCTTTTGGATATGGCATGCATCGGGTCTCTCACTTTGCTGTATGGTAGTTGTAGTTGTTTGCGCAACCGTCCAGCTAGGTCTTCAGACAGAAAATACTACATCCCCCAGGCACACGGCACATCGCTCCTCCCACTTTCCCTCAGCTCGCCTCCACTCCCACTTTCTGTTGGTCCGCGGGGAAGTCGCAAGATGGCCGACGTCGCATGAAAGTATGTTCCTCTCCTCAACATGAAGTCGTGAGTGAGACAGAGAGCGAGGGAGCTTACGTCGGGCTTTTGTTTTTGTTTTATTTTAGTTGTTTTACTTTATTTTCCCCTTAATTATTCATCTCATTCCGAATCGCAGCAGCCCCCGATTCGTCTCGACTAGTTGACGCGTCAATCACGCCGGGATCTTGGCTAACTGGCTAAGTGCGCGAGCTAGTTTGTTAGCCACAAACTGTAGCTCTTATAACTGTTAACCAGCACAGGACATACTGTATCCACTATCAGCTAGAGTTAGTTTTAATACCCTAACGGGCATGTTGGATAGCAACGGCGTAGTTGTTGTTTAGTTTGCAGCTAGCTGTGTTACAAATAGGATTATATTTTGATGTTACCAACATTGTCGACATCATAACTGTAGCGTGCGCGCCGTTATCCTCCAGTCGTTACGTTGTAGACCGTGCAACAATATAATTGATCAAAATAGAGAGACTTTTAGCAGGATTATAATATTGACACCGTGAGGAATGGACACAGATTGCACTTACACGACCAAATGTAAAGAATAGCCACGCGTATCTGGAATTACAGGGGGTCGGTTGACAGTTGCATTTGTCTGATAATTTACCAGACATTTCAGGTCTTTAGTTATTCAACTATAACCGGTCAGATCTAGTTCTGAGCACATAACCAATAAATCAACTTCTTAACAAGGTTCATCCATCTCACGCGCATAGACAGACACAAAATGGGAGTTCAAGGCTTTCAGGAGTATTTGGAGAAACGCTGCCCTGGGGCGGCTGTTCCAGTAGATCTTCTCAAGCTCGCCCGAACGGCAGGCCACTCTGGCCTTCAGCGGCTCTACGGGGGCTACCAGACCGACTGGGTTTGTGGAGGCGAGTGGAATGCAATGCTCGGCTATCTGGCGGCGCTTTCCCAGGCCTGTTTGTACCAAGGCGGACTGGAGCTGGTGGTGGTTTTTAACGGAACGCTTGGGAAGGATCGCTGGCCGGAGTGGGCGCGGCGGGCACAGGGGCAGCGGCAGACCGCACAGCTCATCGTCAACCATGTCGGAAGCAAGGCCACGCCCCCTCCGCGGGCCTGGTTCCTGCCCCCGGCCTGCCTGAGCCACTGTGTCCGCCTCGCCATGTTCCGATTCCGCGTGCGGGTGGTGCAGACCCTGGAGGACCACCATCAGGAGGTGCTATCCCTGTACAGAGACTATGGTTTTCAGGGTCTGATCGCACAGGACTCAGAGTTTGCGCTATGCAACGTTCCGGCCTATTTCAGCTCCCACGCTCTCAAGCTCTCCTGGAATGGCAAGAATCTGACCACTCACCAGTACCTGCTATCAGAAGCGGCTCGCCAGCTCGGCCTCAAGACCCAGCACCTGCCAATCTTTGCTGCTCTTCTTGGTAACCACATTCTGCCAGATGAAGACTTGGCTGCCTTTCATTGGAGTCTTCTAGGCCCAGAACACCCTCTTGCCTCCCTCAAGGTAAGGGCTCATCAGTTAGTCCTCCCTCCATGTGAGGTTGTTATCAAGGCTGTATCTGAATATGTGGCATCCATCAAAGATCTTGGGAATTTAGATTCGGTGGCCAAGGATGTTTTCAAGCAGTCACAGTCACGTACAGAAGACAAATTTGAGAGGTTTAAGAAGGCAGTGGAGTATTTTTCAGCGGCCAGTAAACCAAGACCTCTCTCCATGGGACCTTCTCCTTACCTCTTTCCAGGCTTTGGGCCTAGTCAATTCAGCGGACCTCCCGGCCACATGGGGGCAATGCAGCCTGTAAAAGCTCAGTTTGGTCCACCCCAGGTTAAGGTGCCTTATCCAGGTGGGCTCTACGGACCCAGCCCTGCCACTGGTCCAGCCCTTTTATGCCAGAACCCAACTCAGCCTCTGCAGGACTGTAATGATTCACTAGTTGGGAAAATGGGCTTTACTGATTGGTCTGCTCCATATGATTCCTCTCAAGGTGGCAACCGACAGCCCAATCATCACACTGCTGCTCCCACAGGCCCCTCCCCCTCATCGTCGTCGTCTTCAGATGGGGAGGAGCAAAATGACACCAGCACTAATCATTTGGCTGACAAGTCCACGAGATGGGAAGATCCCAGTGGACGGGGCGGCAGTGGCTCTGGGGACGGACACCATGGTAACGGAAGTGGGCCGTCCATTCCATCATTGCTGTCCATGCCAACACGGACTCACATGGACATCACAACTCCACCCCTTCCACAGGTCAGTGCCGAGGTGCTGAGAGTGGCGGAGCACAGACACAGGAGAGGACTCATGTATCCACAGATCTACCACATCTTGACCAAGTATGCCTACGGGGTGCTGTTCAGCTTGGCTGAGACCCAGCGGAGGCTTGAGAGACTAGCCATGCGCAAGCGTAGTCCAGTTGACGTGCCCCCGGTGATTGTAAAGGAGTGGTGTGCCAGTAAAGCTAAATCTGCCCTGACCCCTGAGCTCGTTCCAGCCCTGTGTTTCCGCGAGTGGACGTGTCCCAACCTCAGGCGGTTGTGGCTGGGCAGAGCCTCAGAGGACCGTAGCCGCCGTACGCGAGCCTTTTTAGCCTGCATGCGCTCTGACTGCCCTGCCCTACTCAACCCGACCTGTGTACCATCTCACCTGCTGCTCATGTGCTGCGTGCTCAGGTATATGATGCAGTGGCCGGGGGGTCGCATTCTTCAGCGCCATGAGCTTGATGCCTTTTTGGCTCAAGCTGTGTCCAACCAGCTCTATGAGCCTGACCAACTTCAGGAACTCAAGGCAAGTCATGACTGTCAGTTCTGTTACATACTGTCAACACTGTTACTCTACCTTGGTAACAGTTTGAAGGTGGAGAAGGTGGATAACCGTGGGGTGCAGCTGGCCTCTCTGTTCATGAGCGGAGTAGACACTGCCCTGTTTGTGAATGATGTATGTGGACAGCCCCTGCCATGGGACCACTGCTGCCCTTGGGGCTTTTTTGATGGGAAGTTGTTCCAGAGCAAGCTAGCTAAAGCCACCAGAGACAGAGCCTCCTTACTTGACATGTGTGAAGGCCAGGAGGAACTGGTTTCGAGGGTGGAGAAGATGCGCCAGGCCATTCTGGAAGGCATCAACCTGTCCCGGCCGCCGCCTCCACCTCCACCACTGCCACCCCCTGCATTCCTCCCCCCTGCCATGGTGCCCCCTTTTTACCCCATGCATCCTCTTTATCCTCCTCGCCCAATGGGCTCCATGCCTCCTCCTCCTCACCATCACCACCAGCACCGGCCCAGGGCCTTCCCAGGAATCCAGTCTATACCTCCCCAGGGTGGCAAGCTGGAAATAGCTGGTATGGTTGTTGGTCAGTGGGCTGGGAACAAGCCTGTCCGTGGCAGAGGGGGGTTCAATATGCAGGTGGTGTCAGTAGGAGGGAAAGGTCCCCCAAAGCTCACTGAGGACGTTAAAGCGGTGGGACGGCCCACGGAGGGAACGGGGAGTCCTTCGCAGCAGCTGAACGGCAGCTCTTCAGGAAGCGCCACTGGTCAAGCCCTTGACCTGCCACCACTGGCCCAGCCAATCCAGTGTGCCTTAGCCAGCAGAGACAACCAGTCAGGAGATGGGGTGGAGGTAGAGGCCCCTTGTTGCCTTGACGACTGCCCATCAGATGGTGCACTACAGAAAGAGGAGTAATTACATCCCAAAATGTAATAAGAATGAGAGAGTGAGAGGGAATGATTTAAGGTCGACTGCCTTTTCCTTGCAAAATTGAATATTTAGGGCACAGTAGCCACTTTGTGTTGTCATGGTATAATTTATGATGCTGCACATGCTGGAAACGACAGATGGACAGTGTCAGGATTGCGGTCTATGTGTCACCTTATGAGCCGGGTCTGGTTTAAAACTGAGCACGTTTAAATCACAACCCTTGATTGCACATCGCCCTGAATCTTCGGATTCTGGACCTCATCCTTTCCACTGGCCCATCAGTGTTGTAGCATCGTGAAAAGCTCTCGAGTGTTTTTTATTTTGACACCGTTTTCTTTTCAGACCTTATAATGTATGATTGCCTAAAATGGCTACAAAAAGCCCCTTAATGCCCAAAGTATATTTAAAAAAATTGACCTACTCGAAACACTTGCACGTGTCACGTTGCACAGCAGCACCTGCTCTAAAGTTTCCACCACACAGCAAAGAATTACACTATTTCTTCTACACGTGGCTGTATCTGCAGTGTACCACATAGGGGAGGATTCAAAGTCAACACTGCCCTGAATACAGTAGACGAGTGGAAACCGTCGGAGAACGCGGGTTGTATTTGTATGTCACAGTGTGCATTCACACACACGGTAGTCCCTTTGTTTTGTTTTGTATATTATCTTATCAAAAACTGATTTGCATGTGGAGAAGTTGCAGTTGTCTTCAGCACAGGGGCCACGGGTGGCCTGAGAAGTCCAGGCTCAGAGAGGCATGTTTGAGTAAGGATGAGCAAGAGGAACGGAAAGAGTCGTACAGGTTACACTCAGCATCCCATAGCTAGCTCAACTCTGTTACTTTATCTCACATGTAGACAATCTTCTTTTAGGCCCACTTCCCCAAGGATTCACAGACAGCAGCACTTAAGCTACTGAAATAGTTCTAAAAGAGATCTTTAAAGCACCTTAAACACCCGAAATTATACATATGCAAATTCCTCCCCTCCGTTGATTGTATTCTAACGTAAAGCACTTAAAATGTTATTTATGATAGTACTGTGCTATATAGAGACAGTAATTTGGTTAATTGGTTAACTTCCTTTTAATGAGCAGCAGACCCGTCATTCCTTTCAACAGTTTAACTGTCCAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18436 lncRNA downstream 14934 5189281 ~ 5189642 (-) True G16459
TU18352 lncRNA downstream 126035 5078342 ~ 5078541 (-) True G16400
TU18340 lncRNA downstream 145649 5058690 ~ 5058927 (-) True G16390
TU18338 lncRNA downstream 150486 5051494 ~ 5054090 (-) True G16388
TU18331 lncRNA downstream 215238 4988569 ~ 4989338 (-) True G16381
TU18439 lncRNA upstream 10771 5232386 ~ 5251506 (-) True G16461
TU18479 lncRNA upstream 129053 5350668 ~ 5350915 (-) True G16497
TU18491 lncRNA upstream 192635 5414250 ~ 5414495 (-) True G16509
TU18494 lncRNA upstream 197326 5418941 ~ 5419396 (-) True G16512
TU18496 lncRNA upstream 238177 5459792 ~ 5460018 (-) True G16514
CI01000001_05191382_05196348.mRNA mRNA downstream 8228 5191059 ~ 5196348 (-) True CI01000001_05191382_05196348
CI01000001_05155976_05158742.mRNA mRNA downstream 45834 5155921 ~ 5158742 (-) True CI01000001_05155976_05158742
CI01000001_05062950_05065565.mRNA mRNA downstream 139011 5062297 ~ 5065565 (-) True CI01000001_05062950_05065565
CI01000001_05017930_05027838.mRNA mRNA downstream 176738 5017520 ~ 5027838 (-) True CI01000001_05017930_05027838
CI01000001_05003724_05017009.mRNA mRNA downstream 187567 5003655 ~ 5017009 (-) True CI01000001_05003724_05017009
CI01000001_05288832_05293421.mRNA mRNA upstream 65141 5286756 ~ 5293421 (-) True CI01000001_05288832_05293421
CI01000001_05295894_05308912.mRNA mRNA upstream 73908 5295523 ~ 5308986 (-) True CI01000001_05295894_05308912
CI01000001_05313109_05313728.mRNA mRNA upstream 91441 5313056 ~ 5313728 (-) True CI01000001_05313109_05313728
CI01000001_05318747_05341451.mRNA mRNA upstream 95899 5317514 ~ 5341773 (-) True CI01000001_05318747_05341451
CI01000001_05355269_05356224.mRNA mRNA upstream 133096 5354711 ~ 5357715 (-) True CI01000001_05355269_05356224
TU18272 other downstream 246734 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 403181 4800901 ~ 4801395 (-) True G15736
TU17472 other downstream 476369 4569477 ~ 4618357 (-) False G15639
TU18440 other upstream 1162 5222777 ~ 5229585 (-) True G16462
TU18669 other upstream 1122489 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1362865 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1615910 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1714462 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043946 True 8920 mRNA 0.45 16 NC_007134.7 18386989 ~ 18415872 (-)