RNA id: TU18330


Basic Information

Item Value
RNA id TU18330
length 364
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G16380
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4972589 ~ 4972952 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGGTATAAAGTATGCTTAAAATAATGTAAAAAAACAACAACAACAAAAAAAGTATATTTTCTATTTTTTAGATCTATTTCTTAAACAATAGAATAATCTTTTCTTACCTGAATTGATATTTCAGTGGCTTCAGTGTTCAGTACAGATGGAAGATCTATTTTTAATTTACAAAAGCATCATCATCGTGTTCTTTGTCCATGTTTCGTCTCCTAAGCCATGACAGTCTGTCGAAAACCTTATTATGATAGAAAAGGAGTCCGCTAGCTTGTTCAAAGCAGATGCTGAAGTAAAATAACTTCTCAGAGAGAAAATTCTACACAACTGTCCAAAATAACAAACAGCGCTCTTGACTGATGTCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18324 lncRNA downstream 348 4971313 ~ 4972241 (-) False G16379
TU18325 lncRNA downstream 348 4971643 ~ 4972241 (-) False G16379
TU18327 lncRNA downstream 348 4971692 ~ 4972241 (-) True G16379
TU18328 lncRNA downstream 468 4971643 ~ 4972121 (-) False G16379
TU18326 lncRNA downstream 468 4971692 ~ 4972121 (-) False G16379
TU18332 lncRNA upstream 3600 4976552 ~ 4977675 (-) True G16382
TU18333 lncRNA upstream 6775 4979727 ~ 4980066 (-) True G16383
TU18334 lncRNA upstream 9026 4981978 ~ 4982318 (-) True G16384
TU18331 lncRNA upstream 15617 4988569 ~ 4989338 (-) True G16381
TU18338 lncRNA upstream 78542 5051494 ~ 5054090 (-) True G16388
CI01000001_04944573_04950116.mRNA mRNA downstream 22473 4944485 ~ 4950116 (-) True CI01000001_04944573_04950116
CI01000001_04846242_04846925.mRNA mRNA downstream 124889 4845807 ~ 4847700 (-) True CI01000001_04846242_04846925
CI01000001_04757377_04759421.mRNA mRNA downstream 213082 4756419 ~ 4759507 (-) True CI01000001_04757377_04759421
CI01000001_04746153_04754209.mRNA mRNA downstream 218380 4746133 ~ 4754209 (-) True CI01000001_04746153_04754209
CI01000001_04732844_04744038.mRNA mRNA downstream 228551 4732844 ~ 4744038 (-) True CI01000001_04732844_04744038
CI01000001_05001068_05003302.mRNA mRNA upstream 27589 5000541 ~ 5003417 (-) True CI01000001_05001068_05003302
CI01000001_05003724_05017009.mRNA mRNA upstream 30703 5003655 ~ 5017009 (-) True CI01000001_05003724_05017009
CI01000001_05017930_05027838.mRNA mRNA upstream 44568 5017520 ~ 5027838 (-) True CI01000001_05017930_05027838
CI01000001_05062950_05065565.mRNA mRNA upstream 89345 5062297 ~ 5065565 (-) True CI01000001_05062950_05065565
CI01000001_05155976_05158742.mRNA mRNA upstream 182969 5155921 ~ 5158742 (-) True CI01000001_05155976_05158742
TU18272 other downstream 14747 4950689 ~ 4957842 (-) True G16332
TU17581 other downstream 171194 4800901 ~ 4801395 (-) True G15736
TU17472 other downstream 244382 4569477 ~ 4618357 (-) False G15639
TU18440 other upstream 249825 5222777 ~ 5229585 (-) True G16462
TU18669 other upstream 1371152 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1611528 6584480 ~ 6615589 (-) False G16753
TU19958 other upstream 1864573 6837525 ~ 6890414 (-) False G17789
TU19985 other upstream 1963125 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182

Expression Profile