G16378


Basic Information

Item Value
gene id G16378
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4964457 ~ 4965516 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18323
TGATGTCAAAGCTGAATTTTTTTTAGCATTATCAATGGTACATTTGAAGGCCCGATCCATTGACTTTTAGCACACTCCAGTCTTTAGTGTCACATGATCCTTGAGAAATCGTTCTAATATGCTGATTTGCTGCTCAAGAAACATTTAACATTTATATTTAACAGTTGTGCTACTTAATATATAAATGGAAACTTGTTTTCAGGATTCTTTGATGAAGTTTAAAAAACAAGCATTTATTTGAAATAGTAATCTTCTGTAACATTATAAATGTCTTTACTGTCACTGAAGATATTTGGAAGAATGTTTGTAACCAAGCAGATCTTGCCCCCATTTGACTACCATAGTAGGAAAAAAGTGGGGGGTGAGATTACTTGGTTACAAACATTCTTCCAAATATTTTCCTTTGTGTTCAGCAGAAGAAAGAAATTCATACAGGTTTGGAACAACTTGAGGGTAAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTACCCCTTTAATGAAAAAAAAAAAAAACTTTTGATCAGTAGTGTAAATATGTTCTGTATTTCTTAGAGAATAAAGGCTTTGTCGTGCATTATTACCTGTACTGACTCCACATATATAGTCAAAAAGTTGATACACTCGCTTTCCTGTTTGAGCCTCCAGCTGTTTTAGCACATGTAGTGGAACTAGCCCTCTGTAATGCAAGAAACAGTTGTAAGAAAAAGCCATGTTGGCATAAACACATTTCTCTATATGAGTGACAAAAATAATTGTCATTAATAATTGTTATACTCCATAAAATTGCTCACAGATGTTCAGTATCCCTAAAAAGCTTTTTTGGAAGACATATTGGATCACATATTTTAAAGGGAAAAAAACTGTAGAGCATGTTGATTAAATGTGGTGTTTCGTACTTGGTTCCACCTCCGTCAATGGAAAGCACTCTGATCCCACAACCTTTGACTGGATCCACATAACCAATCAGAGCAAGAGTTTCCCTAATGGCTTCTTGAAGTTTTTCATTCATCCAAAAGATCCGGCGTCGTTTAAGGAGATGCAGTGCTGCTTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18323 True 1060 lncRNA 0.34 1 4964457 4965516

Neighbor

gene id symbol gene type direction distance location
CI01000001_04944573_04950116 TFIP11 coding downstream 14341 4944485 ~ 4950116 (-)
CI01000001_04846242_04846925 BHLHE23 coding downstream 116757 4845807 ~ 4847700 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 204950 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 210248 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 220419 4732844 ~ 4744038 (-)
CI01000001_05001068_05003302 NA coding upstream 35025 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 38139 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 52004 5017520 ~ 5027838 (-)
CI01000001_05062950_05065565 NA coding upstream 96781 5062297 ~ 5065565 (-)
CI01000001_05155976_05158742 NA coding upstream 190405 5155921 ~ 5158742 (-)
G16376 NA non-coding downstream 94 4962467 ~ 4964363 (-)
G16375 NA non-coding downstream 3666 4959321 ~ 4960791 (-)
G16373 NA non-coding downstream 32484 4931758 ~ 4931973 (-)
G16371 NA non-coding downstream 37509 4926685 ~ 4926948 (-)
G16367 NA non-coding downstream 38758 4914168 ~ 4925699 (-)
G16377 NA non-coding upstream 553 4966069 ~ 4970361 (-)
G16379 NA non-coding upstream 5797 4971313 ~ 4972241 (-)
G16380 NA non-coding upstream 7073 4972589 ~ 4972952 (-)
G16382 NA non-coding upstream 11036 4976552 ~ 4977675 (-)
G16383 NA non-coding upstream 14211 4979727 ~ 4980066 (-)
G16332 NA other downstream 6615 4950689 ~ 4957842 (-)
G15736 NA other downstream 163062 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 236250 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 486312 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 564942 4392314 ~ 4399804 (-)
G16462 NA other upstream 257261 5222777 ~ 5229585 (-)
G16664 NA other upstream 1378588 6344104 ~ 6347955 (-)
G16753 NA other upstream 1618964 6583054 ~ 6615589 (-)
G17789 NA other upstream 1872009 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1970561 6931621 ~ 6937231 (-)

Expression


Co-expression Network