G337052


Basic Information

Item Value
gene id G337052
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2397103 ~ 2397302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399240
CAGCTACTGCAGCACTGGCATCAGTGGTTGACACAAGATTCAGGTGATGGCATGCACACTTATGCCTTGGAAGGTGATACTCCAAGccattgttgttatttaaaatagaaCAGACATCCTAATACTCTAAGTCTTCTAAAGGACTTTCATCTTCTGGAGCATTTTCCTCAATTCTCACTGGTTTCTTCATCGCTCTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399240 True 200 lncRNA 0.43 1 2397103 2397302

Neighbor

gene id symbol gene type direction distance location
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding upstream 156680 2209792 ~ 2240423 (+)
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding upstream 233580 2156555 ~ 2163523 (+)
rims2b LOC108257276 coding upstream 254081 2074883 ~ 2143022 (+)
cthrc1a cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923 coding upstream 331193 2059332 ~ 2065910 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding upstream 358056 2026407 ~ 2039047 (+)
LOC117595862 rdm1 coding downstream 50914 2448216 ~ 2453296 (+)
rdm1 rdm1 coding downstream 144180 2541482 ~ 2551073 (+)
ifnphi3 LOC108256834 coding downstream 157355 2554657 ~ 2556829 (+)
LOC117595863 NA coding downstream 169390 2566692 ~ 2568040 (+)
arhgap27l arhgap27 coding downstream 210044 2607346 ~ 2660278 (+)
LOC117595896 NA non-coding upstream 137567 2242185 ~ 2259536 (+)
G336991 NA non-coding upstream 152873 2243493 ~ 2244230 (+)
LOC117595895 NA non-coding upstream 193362 2201780 ~ 2203741 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding upstream 412607 1965976 ~ 1984496 (+)
G336482 NA non-coding upstream 554133 1842589 ~ 1842970 (+)
G337059 rdm1 non-coding downstream 53217 2450519 ~ 2551280 (+)
G337066 NA non-coding downstream 110258 2507560 ~ 2511667 (+)
G337075 NA non-coding downstream 186749 2584051 ~ 2585796 (+)
G337113 NA non-coding downstream 399801 2797103 ~ 2797348 (+)
G337117 NA non-coding downstream 407206 2804508 ~ 2804746 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 4566 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 45354 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 56842 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 451237 1876274 ~ 1945866 (+)
polr2k NA other upstream 716751 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1910620 4307922 ~ 4325036 (+)
G338163 NA other downstream 1955220 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 2219022 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 2300955 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 2360512 4757814 ~ 4762602 (+)

Expression


Co-expression Network