G337117


Basic Information

Item Value
gene id G337117
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2804508 ~ 2804746 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399341
GTTTGTTACTCACTGACGAGGCTAAGTAGCGATCGCTAACGTAACATAAGAGctcttaattatccaaagaacctttaaagagaacccttgaagaaccgtttttattatttttaaatcaaagcgTATACCTTGTGGAGGCCAAACAATCTAGTCTAGTCTGTGTGAAAATGTTAACGGCTACtaacttagaaaaaaaatgctagctGCAATAGTTGGTGAGCTCCAAAGTTAATTTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399341 True 239 lncRNA 0.36 1 2804508 2804746

Neighbor

gene id symbol gene type direction distance location
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 62914 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 144230 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 236468 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 247679 2554657 ~ 2556829 (+)
rdm1 rdm1 coding upstream 253435 2541482 ~ 2551073 (+)
tanc2a tanc2,LOC107662401 coding downstream 40661 2845407 ~ 2890143 (+)
hdac5 hdac5 coding downstream 190531 2995277 ~ 3023586 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 226902 3031648 ~ 3039255 (+)
vwa3a vwa3a coding downstream 236622 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 267154 3071900 ~ 3091878 (+)
G337113 NA non-coding upstream 7160 2797103 ~ 2797348 (+)
G337075 NA non-coding upstream 218712 2584051 ~ 2585796 (+)
G337059 rdm1 non-coding upstream 253228 2450519 ~ 2551280 (+)
G337066 NA non-coding upstream 292841 2507560 ~ 2511667 (+)
G337052 NA non-coding upstream 407206 2397103 ~ 2397302 (+)
G337119 NA non-coding downstream 16344 2821090 ~ 2821530 (+)
G337126 NA non-coding downstream 28842 2833588 ~ 2834059 (+)
G337127 NA non-coding downstream 29525 2834271 ~ 2834556 (+)
G337128 NA non-coding downstream 36610 2841356 ~ 2842455 (+)
G337129 NA non-coding downstream 37918 2842664 ~ 2842875 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 411971 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 452759 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 464247 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 858642 1876274 ~ 1945866 (+)
polr2k NA other upstream 1124156 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1503176 4307922 ~ 4325036 (+)
G338163 NA other downstream 1547776 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1811578 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1893511 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1953068 4757814 ~ 4762602 (+)

Expression


Co-expression Network