ifnphi3 (LOC108256834)


Basic Information

Item Value
gene id ifnphi3
gene name LOC108256834
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2554657 ~ 2556829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946093.2
TCATAATGAATGACTCAGGGAAACCACCTAACTCTGCTCTCTCTGCCTCAGATTATTTATTCTCAGGTAGAATCTGAAAGATGGCAGGTCTTCATGCTTTCACCTGGCTGTGCACCGTGATCATCTGCATGGCACATGTGAGCTCAATGCCTACAACCTGCAGGCTTCAGAAGAGACTGATGGAGAGATGCCACGATATTCTGGAGAAAATGGGAGACAGATTTCCTTTGCATTGCCTTGAAGGCAACGTTCTTGTCCCGTTTCCCGAGGCCGCGTTCCAGTTCAACACGTCTCAACAGGCTGTTGCCCTGGAAAAGACTATCTACTTAACACTGACCAGCATCTCCTCCTTGTTTGATGAAGACGGTGTTCCTGATCAGTGGAAGAATCTCGAGGACTTTCAGAACATCATTTACCGCCAGATTGAGGAGAACGAATGTATTATGAACAAAACTCAGGACTCACAGGAGGACTTTCTCAGGCGTGAAAAGGTGCTCAAAGAGTATTTCAACAAAATATCAGCGGTTTTGAAAGAAAAGAATTTCCAGGTTTGTGGTTGGGAATTTGTCCGAAAGGAAGCCCTCATCACTCTAcagttcattctgaataaagaCGTGGAGGGCGTTCTCTTTTCTAGCCGGGGCTGAGCAACTCCCAGAGTTCTG

Function

NR:

description
PREDICTED: interferon alpha-1-like, partial

GO:

id name namespace
GO:0051607 defense response to virus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946093.2 True 665 mRNA 0.46 5 2554657 2556829

Neighbor

gene id symbol gene type direction distance location
rdm1 rdm1 coding upstream 3584 2541482 ~ 2551073 (+)
LOC117595862 rdm1 coding upstream 101361 2448216 ~ 2453296 (+)
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding upstream 314234 2209792 ~ 2240423 (+)
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding upstream 391134 2156555 ~ 2163523 (+)
rims2b LOC108257276 coding upstream 411635 2074883 ~ 2143022 (+)
LOC117595863 NA coding downstream 9863 2566692 ~ 2568040 (+)
arhgap27l arhgap27 coding downstream 50517 2607346 ~ 2660278 (+)
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding downstream 114429 2671258 ~ 2741594 (+)
tanc2a tanc2,LOC107662401 coding downstream 288578 2845407 ~ 2890143 (+)
hdac5 hdac5 coding downstream 438448 2995277 ~ 3023586 (+)
G337059 rdm1 non-coding upstream 3377 2450519 ~ 2551280 (+)
G337066 NA non-coding upstream 42990 2507560 ~ 2511667 (+)
G337052 NA non-coding upstream 157355 2397103 ~ 2397302 (+)
LOC117595896 NA non-coding upstream 295121 2242185 ~ 2259536 (+)
G336991 NA non-coding upstream 310427 2243493 ~ 2244230 (+)
G337075 NA non-coding downstream 27222 2584051 ~ 2585796 (+)
G337113 NA non-coding downstream 240274 2797103 ~ 2797348 (+)
G337117 NA non-coding downstream 247679 2804508 ~ 2804746 (+)
G337119 NA non-coding downstream 264261 2821090 ~ 2821530 (+)
G337126 NA non-coding downstream 276759 2833588 ~ 2834059 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 162120 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 202908 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 214396 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 608791 1876274 ~ 1945866 (+)
polr2k NA other upstream 874305 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1751093 4307922 ~ 4325036 (+)
G338163 NA other downstream 1795693 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 2059495 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 2141428 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 2200985 4757814 ~ 4762602 (+)

Expression


Co-expression Network