LOC117595825


Basic Information

Item Value
gene id LOC117595825
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12684133 ~ 12687213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577006.1
GGCAGTCCTTGCCGAGGATTCGGACACGCAGGCAGTTTAGTTCTTTGATCTGAAAGAAGACACATAAACATCGGCTTGTAGACATTGCTTTGAGGTACACATGCCACTTTGACCTTCATGTCTGGTTTGTTGTTGTCCTAACTTTATTAACCTTGTATACAGTCATCTCCTGCAAGATGATGTGTTTCAATTtaatacactcaaaaaaaaaaaaaaacctctgccTCAGCTTTGCTTTTGAGAAAAAAAGCACTAGGGAATTAAGGAGGAAGTCCAACATGAATAATTCAGTGCAGGTGCACATCGAGAAGAAAGTCTGAGCCATGTGGATTCTCAAGTAGCATCTCATGCTCtgggggaaaagaaaaggatCAAATCTGATTGCGTCGGATCTGCTTACACTAGGCACAGAGGCGTAACAGCTTTCTCTTGGCCTGGCTGCTTCTTGCACTAGGTTTCGGCTCCACATGCTGTCCTGCTCGAGTCAGTgctccaggctggtggagggtTTTATAGCCATAACGGGAGCGCAGAAATCACCTAACGCATCGGTGACGCGCTTTCCCCTGTCAAGTGACTAACTTCATCAACAGCAAGAAGGCAACAAGCAGCAAACTTTGACGAAACATCCTTACATAATTAACTATCGAAACGGTCCAACATGCGATGCTGCCAAATGAGGTAACACAGGAATGAGGAGAGGGCGCATCTTTTGGCCGGTCTACGAGCGCGCGATACCGGATACACTACATCCTGCTGCAACTGCGTCTccgagGGATACTTCAACCACAAACCCCCAACACTTTGTTGGTGTACATCTCCATGGTTACTCTTGAAAAAGGCCTGATCCATTGTGTCTTTCTTTACTCTGCTCTGAACTGGACACATCTCATGCTGGTCTTAATGATGTGTGCATATGTCCGAGTCTTTGGAGTCTGCATCTTCCATTTCCTCCAGGGGGCAATGCACACATGTGGTGGTAAAAAGCACAGCTCTGAATGATAATGAGTGCCTCAAATCCCTGAACACCCCcagacacaaacatgcacaagcatgttcacatcatacatacacaataGCACCTTGAGGACAAAATGAAGCAATAACCTGTTAGACACTGAATGTGTAAATACATTAAGATTTATACTTATAAAATGCTAGAATATTTTAAGTAGTAAGTAGGAATAGTCCATCCCAGGTCAAGTAGCACTTGCCACACCGATACAAGAATTATTACAGTTATAATGcagtgctgtttatttttatcttctgTCTTCCCACTTCCAAAATGAGTTTTACCTCTCACCTCTTTCCCTTCAGGtcactttttacacacactctggCTCTCTTTAACAGCTGTTCGTGTCAAATGTCAAACATGTGATCTCAGCATTGAGTCACGCGTGTGTGTTAGTTTAGATACACTAATAATTTAAACAAGATGAGTATGTGTGTTGAATAATAGGCTGTGGAAGCCCATAAATGAGCAATCATAGACATGGTATGCATGGACACTCACCAGCTCATTACATAAAATCACACTATAAAGcatgtatatacacaaacacgTGTCCTGCACTATCACTGTGGGTGTCAtttttataacaacaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577006.1 True 1613 lncRNA 0.43 3 12684133 12687213

Neighbor

gene id symbol gene type direction distance location
arpp21 arpp21 coding upstream 19064 12650217 ~ 12665069 (+)
pdcd6ip pdcd6ip,LOC107591619,LOC107742851,LOC107696546,LOC107706184 coding upstream 36873 12634750 ~ 12647260 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding upstream 52181 12609500 ~ 12631952 (+)
clasp2 clasp2 coding upstream 77775 12556877 ~ 12606358 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding upstream 129780 12531305 ~ 12554353 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559,LOC107696518 coding downstream 15824 12703037 ~ 12709593 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 27494 12714707 ~ 12723544 (+)
pum1 pum1 coding downstream 39903 12727116 ~ 12743818 (+)
sdc3 sdc3,LOC107696563,LOC106570634 coding downstream 64316 12751529 ~ 12784427 (+)
LOC113536229 LOC108256952 coding downstream 105982 12793195 ~ 12797790 (+)
G342629 NA non-coding upstream 4803 12679115 ~ 12679330 (+)
G342628 NA non-coding upstream 6936 12676848 ~ 12677197 (+)
G342627 NA non-coding upstream 8782 12675141 ~ 12675351 (+)
G342621 NA non-coding upstream 35416 12648495 ~ 12648717 (+)
G342617 NA non-coding upstream 127653 12556269 ~ 12556480 (+)
G342735 NA non-coding downstream 459832 13147045 ~ 13147846 (+)
G342836 NA non-coding downstream 614326 13301539 ~ 13301803 (+)
G343522 NA non-coding downstream 1075871 13763084 ~ 13766601 (+)
G343620 NA non-coding downstream 1282021 13969234 ~ 13994319 (+)
G343671 NA non-coding downstream 1389244 14076457 ~ 14078541 (+)
sostdc1b LOC108257373 other upstream 868860 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1210810 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1389777 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 2202163 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2487131 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 4794 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 98624 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 217410 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 389957 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1518508 14205721 ~ 14231844 (+)

Expression


Co-expression Network