LOC117595896


Basic Information

Item Value
gene id LOC117595896
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2242185 ~ 2259536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577081.1
GAAACTCAGAGTGAAGGGATGGGCACTGACTGAAAGGATGGATTTAGCTTTCTGCACTACCTTTCTTTTATAAAGCCTAAAGCTAGAAAGTGAAAGTGACTACACCGTTAGTGAAAGATGGAGAATCCTCATCTCGACTCAGACGTCTCCCCACTCTTAGACCAAAGTCTGACCCAGATAAGGAGACCAGACTCACCAGTATTCAGCAGTGTTTCCATGAAGAGTGATGCTTCTATGGATCCTCCTCATAAATTCAAAGATGA
>XR_004577082.1
CTGGAAAACATGAAGATTTAGTAAAGCTGAGATTTATAATTCGACACAACACACCGACTGCTGACTAAAGCCTAAAGCTAGAAAGTGAAAGTGACTACACCGTTAGTGAAAGATGGAGAATCCTCATCTCGACTCAGACGTCTCCCCACTCTTAGACCAAAGTCTGACCCAGATAAGGAGACCAGACTCACCAGTATTCAGCAGTGTTTCCATGAAGAGTGATGCTTCTATGGATCCTCCTCATAAATTCAAAGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577081.1 True 263 lncRNA 0.43 3 2245940 2259536
XR_004577082.1 False 258 lncRNA 0.42 3 2242185 2259536

Neighbor

gene id symbol gene type direction distance location
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding upstream 1762 2209792 ~ 2240423 (+)
LOC113546187 LOC108257276,LOC108412938,LOC107668707,LOC107689551,LOC107559391 coding upstream 78662 2156555 ~ 2163523 (+)
rims2b LOC108257276 coding upstream 99163 2074883 ~ 2143022 (+)
cthrc1a cthrc1a,cthrc1,LOC108257304,LOC108438867,LOC107746934,LOC107675657,LOC107668704,LOC107754923 coding upstream 176275 2059332 ~ 2065910 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding upstream 203138 2026407 ~ 2039047 (+)
LOC117595862 rdm1 coding downstream 188680 2448216 ~ 2453296 (+)
rdm1 rdm1 coding downstream 281946 2541482 ~ 2551073 (+)
ifnphi3 LOC108256834 coding downstream 295121 2554657 ~ 2556829 (+)
LOC117595863 NA coding downstream 307156 2566692 ~ 2568040 (+)
arhgap27l arhgap27 coding downstream 347810 2607346 ~ 2660278 (+)
LOC117595895 NA non-coding upstream 38444 2201780 ~ 2203741 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding upstream 257689 1965976 ~ 1984496 (+)
G336482 NA non-coding upstream 399215 1842589 ~ 1842970 (+)
G336481 NA non-coding upstream 399649 1821132 ~ 1842536 (+)
G336261 NA non-coding upstream 484781 1756185 ~ 1757404 (+)
G337052 NA non-coding downstream 137567 2397103 ~ 2397302 (+)
G337059 rdm1 non-coding downstream 190983 2450519 ~ 2551280 (+)
G337066 NA non-coding downstream 248024 2507560 ~ 2511667 (+)
G337075 NA non-coding downstream 324515 2584051 ~ 2585796 (+)
G337113 NA non-coding downstream 537567 2797103 ~ 2797348 (+)
G336822 ldlrad4 other upstream 296319 1876274 ~ 1945866 (+)
polr2k NA other upstream 561833 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 582726 1657317 ~ 1659459 (+)
G336334 NA other upstream 906611 1269809 ~ 1335574 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 42609 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 98580 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2048386 4307922 ~ 4325036 (+)
G338163 NA other downstream 2092986 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 2356788 4616324 ~ 4668256 (+)

Expression


Co-expression Network