G352610


Basic Information

Item Value
gene id G352610
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9681029 ~ 9681798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU417800
TTGGAAACACCACCGCCATCAGTGTTTGCACCTTTTACTGAGGATTAGAGTCCTGCTTGCTTTCAAAAAAAGAGGCTAAATATACACAATGCTGAAATCAAACACATTCCTCCCTCAGCACTAAGGCAGTTGGCATGAGAATGTTGAATGTTGAGGTCTGCTGGGAACAGTAGGATACTGGAAAGAGAAGAAGGGGGAGAACATGGGCCTCCAGATCAACAGGGGCCAGTGTTTGAGCCCTTTGCCCCATAGCCGCGGGCCAGCTGTCCTAAAAAGCAGTGATCCTCTCGTCTGGAGCTCCGTTGTTTACCCAGGGCCATGCACACTACAGCGGCCAGCACAAAAGCCCTGTGGGATTCCCGATCTTCTTTCGTTTTGATCTCAGAGCTACCTGCCTCGGCTCGGGAAGTCTCCAAAGAGTACGGCTCCAAGAGAAGGACTTTACCAGAAGCAAGGCTCCTCAACTCATCTTCTGTTGGATGCTGGTACCAACGCAGACTGAAACATGCAAGCCAggacata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417800 True 522 lncRNA 0.50 2 9681029 9681798

Neighbor

gene id symbol gene type direction distance location
polr3g polr3g,LOC107557435 coding downstream 308410 9369976 ~ 9372619 (-)
adgrv1 adgrv1 coding downstream 320148 9229961 ~ 9360881 (-)
pmpca pmpca coding downstream 504567 9169861 ~ 9176462 (-)
coq2 coq2 coding downstream 526340 9148049 ~ 9154689 (-)
mboat4 mboat4 coding downstream 552565 9127011 ~ 9128464 (-)
LOC113536918 LOC108255830 coding upstream 44597 9726395 ~ 9728449 (-)
rasa1a rasa1,LOC108443998,LOC106580138 coding upstream 57213 9739011 ~ 9767469 (-)
vcana vcan coding upstream 555838 10237636 ~ 10269049 (-)
zgc:110626 LOC108255345 coding upstream 651628 10333426 ~ 10339194 (-)
f2r f2r coding upstream 685597 10367395 ~ 10369658 (-)
LOC117595977 NA non-coding downstream 74055 9603400 ~ 9606974 (-)
G352512 NA non-coding downstream 348058 9332766 ~ 9332971 (-)
G352487 NA non-coding downstream 470499 9206428 ~ 9210530 (-)
G352498 LOC108255998 non-coding downstream 480341 9196783 ~ 9200688 (-)
G352491 NA non-coding downstream 496275 9182148 ~ 9184754 (-)
G352869 NA non-coding upstream 467459 10149257 ~ 10225339 (-)
G352878 NA non-coding upstream 555086 10236884 ~ 10237277 (-)
G352881 NA non-coding upstream 627487 10309285 ~ 10309632 (-)
G352883 NA non-coding upstream 630789 10312587 ~ 10313356 (-)
G353075 NA non-coding upstream 750229 10432027 ~ 10588716 (-)
LOC113536894 ttc16 other downstream 631621 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 1026417 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1095018 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1124353 8553647 ~ 8556676 (-)
card9 card9 other downstream 2073563 7602907 ~ 7607466 (-)
LOC113536891 NA other upstream 94168 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 688364 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 827273 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 1049729 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 4040307 13722105 ~ 13724858 (-)

Expression


Co-expression Network