Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113536891 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 9775966 ~ 9814416 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU417869 | True | 432 | lncRNA | 0.49 | 4 | 9775966 | 9814416 |
| XM_026931041.2 | False | 409 | mRNA | 0.50 | 3 | 9810181 | 9814411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rasa1a | rasa1,LOC108443998,LOC106580138 | coding | downstream | 8497 | 9739011 ~ 9767469 (-) |
| LOC113536918 | LOC108255830 | coding | downstream | 47517 | 9726395 ~ 9728449 (-) |
| polr3g | polr3g,LOC107557435 | coding | downstream | 403347 | 9369976 ~ 9372619 (-) |
| adgrv1 | adgrv1 | coding | downstream | 415085 | 9229961 ~ 9360881 (-) |
| pmpca | pmpca | coding | downstream | 599504 | 9169861 ~ 9176462 (-) |
| vcana | vcan | coding | upstream | 423220 | 10237636 ~ 10269049 (-) |
| zgc:110626 | LOC108255345 | coding | upstream | 519010 | 10333426 ~ 10339194 (-) |
| f2r | f2r | coding | upstream | 552979 | 10367395 ~ 10369658 (-) |
| sv2ca | sv2c,LOC107755746,LOC107748435,LOC107565680 | coding | upstream | 604110 | 10418526 ~ 10449587 (-) |
| ankdd1b | ankdd1b | coding | upstream | 648196 | 10462612 ~ 10470825 (-) |
| G352610 | NA | non-coding | downstream | 94168 | 9681029 ~ 9681798 (-) |
| LOC117595977 | NA | non-coding | downstream | 168992 | 9603400 ~ 9606974 (-) |
| G352512 | NA | non-coding | downstream | 442995 | 9332766 ~ 9332971 (-) |
| G352487 | NA | non-coding | downstream | 565436 | 9206428 ~ 9210530 (-) |
| G352498 | LOC108255998 | non-coding | downstream | 575278 | 9196783 ~ 9200688 (-) |
| G352869 | NA | non-coding | upstream | 334841 | 10149257 ~ 10225339 (-) |
| G352878 | NA | non-coding | upstream | 422468 | 10236884 ~ 10237277 (-) |
| G352881 | NA | non-coding | upstream | 494869 | 10309285 ~ 10309632 (-) |
| G352883 | NA | non-coding | upstream | 498171 | 10312587 ~ 10313356 (-) |
| G353075 | NA | non-coding | upstream | 617611 | 10432027 ~ 10588716 (-) |
| LOC113536894 | ttc16 | other | downstream | 726558 | 9040627 ~ 9049408 (-) |
| sh2d3cb | sh2d3c | other | downstream | 1121354 | 8640942 ~ 8654612 (-) |
| malt1 | malt1 | other | downstream | 1189955 | 8570517 ~ 8586011 (-) |
| hint2 | hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 | other | downstream | 1219290 | 8553647 ~ 8556676 (-) |
| card9 | card9 | other | downstream | 2168500 | 7602907 ~ 7607466 (-) |
| iqgap2 | iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 | other | upstream | 555746 | 10370162 ~ 10411686 (-) |
| LOC113536921 | LOC108255872 | other | upstream | 694655 | 10509071 ~ 10517205 (-) |
| LOC113536823 | NA | other | upstream | 917111 | 10731527 ~ 10748838 (-) |
| mrpl41 | mrpl41 | other | upstream | 3907689 | 13722105 ~ 13724858 (-) |
| ccl19a.2 | NA | other | upstream | 5094380 | 14908796 ~ 14924659 (-) |
