ccne1 (ccne1)


Basic Information

Item Value
gene id ccne1
gene name ccne1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 344062 ~ 351769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU424532
aagtaaatgttttatatcaGAGGCAGGAGTCAGAGAGGAGTGATGGCGTTGTAGGATGAATTTAAACTTCCggaagtgtttattttattgttaaagttttaatattacaagtttatttatttcttttttaaaaagcatgtctGTTTTTGAGTCGCGCGCCGCGAGTTTGCGCAGTTTATAAAGGCAAAGGCGCAAAATGAGGCTGAGAGCAGAGCAGCTAGGAGAggaacacacaccataacacacaccataacacacacacacacggggaaTAAGGAGCACACcttcctgaacacacacaggatcacaggcatgatgaagatgatgaagatgaagatggtGTGTGAAAGATCTTAACTTCTCTGCATCTGAAGTTTTTCCTGCACGCGCGGTTTGGAGGCTCTGTGAGGTGTGGAGACACAGCCCTGTGGATATAATGCCCAgtaagagtgtGTTAAACACACAAGTGAACAGCAGAACGGATGAAGCTCCTAAACCCAGCTCGGCTCGCTCCAGGAAGAGGAAAGCAGATGTTGCTATTCACTTACATGATCCGGATGAGGAAATTACAGAGGCGCAGACGAGAAAGAAGCCGTGTCCGCCCCAGGAGACGTGCCGGGATCAGACGGCGGCCTCCTCTCCACGCCAGGCGGATAAACCGGTTGGAATCGGCAGCGTGGGATTCACACACTACGCCAGCAGGAGTGTTTTCGTCACCCCGACACGGCCCTCGCCCCTGCCTGCCCTGTGTTGGGCGAGTAAAGACGACGTGTGGAGCAACCTGCTGAAGAAAGATAAACTTTACCTCCACAATGTGCATGTGATGGAGAGACACCCCAACCTGCAGCCCAAAATGAGGGCCATTCTGCTGGACTGGTTAatcgaggtgtgtgaggtgtatAAACTCCACAGGGAGACGTTTTATTTAGGTCAGGATTATTTCGATCGCTTCATGGCCACACAGAAGAACGTGCAGAAGTCCACGCTGCAGCTCATCGGCATTTCCGCTCTCTTCATCGCCGCTAAGATGGAGGAGATTTATCCTCCTAAAGTGCACCAGTTTGCGTATGTGACGGATGGAGCGTGTACGGAGGAGGAGATCCTCAGCATGGAGGTCATCATCATGAAGGAGCTGAACTGGAGTCTGAGTCCGTTAACGCCGGTGTCGTGGCTGAACATCTACATGCAGATGGCGTATCTGAAGGAGTTCACTGAAGTTCTCATGCCACAGTTTCCTCAGACCACGTTCGTACAGATCGCTGAGctgttggATTTGTGCATTCGGGGTGTGAGGAGTCTGGAGT
>TU424577
TGAAGGTCTCTGGTCCAAGAACTCATCATGAAGGTCTCTggggtgaagtggtgtgatgtggagcGCTGTGTGAGGTGGATGGTGCCATTTGCGATGGCGATACGTGAAGTTGGAAGCTCCTCCCAAAAAACGTTTAAAGGCATTCCAGCAGAGAACATGCACAACATCCAGagccacgccccctacctgGACTGGCTGGGAAAGGTACACTCTCATCAGCTGGAGGATTTGGAACATGGCCAGACCTCGCCCGTCCCGCCCGGAGTGTTGACTCCGCCCCCCAGCAGCGAGAAACCCGAGGACTCTTCGTCCTGACCGCTGCTCCGCTTCAGCtatgtggattgggacacgacCCACAGCCATGCTGTTCTCAGATCAGCTTTGAGAAACCTGCACAACTTTTTATTCTGATCTCTGCAGACTCCTAACCGCTTAATTCtgaatttttaaacatgtattatTGATCCACCGAGTCGCAGCCCGCCTACCGAATCCTCAGAGAGCCTCAGGGCCTGAATGCTGCTATAACGGAGGTGggacacacgcgcacacacacacacacacacacacacacacacacacacacacacacacaaaggattTTTGATGGATTAGATTTTATATTTCACACTTTCGGgggtgtttgtttgtgttaagGTGAATTATGCTATTTTTCTAAGGAAGGCCCAGGTCACCATGGAAACGGCTTTAAATCCTGTAGGACTgggattttattttgaaaatttttaTCCTCTGGTTGTATCCTGAGATTTTTAccaaaatgatctttttttaatgtcatgctgctactgttgtgtattttataaatctaaataaagcTCTAAATGCATACGCAC
>TU424578
TGAAGGTCTCTGGTCCAAGAACTCATCATGAAGGTCTCTggggtgaagtggtgtgatgtggagcGCTGTGTGAGGTGGATGGTGCCATTTGCGATGGCGATACGTGAAGTTGGAAGCTCCTCCCAAAAAACGTTTAAAGGCATTCCAGCAGAGAACATGCACAACATCCAGagccacgccccctacctgGACTGGCTGGGAAAGGTACACTCTCATCAGCTGGAGGATTTGGAACATGGCCAGACCTCGCCCGTCCCGCCCGGAGTGTTGACTCCGCCCCCCAGCAGCGAGAAACCCGAGGACTCTTCGTCCTGACCGCTGCTCCGCTTCAGCtatgtggattgggacacgacCCACAGCCATGCTGTTCTCAGATCAGCTTTGAGAAACCTGCACAACTTTTTATTCTGATCTCTGCAGACTCCTAACCGCTTAATTCtgaatttttaaacatgtattatTGATCCACCGAGTCGCAGCCCGCCTACCGAATCCTCAGAGAGCCTCAGGGCCTGAATGCTGCTATAACGGAGGTGggacacacgcacacacacacacacacacacacacacacaaaggattTTTGATGGATTAGATTTTATATTTCACACTTTCGGgggtgtttgtttgtgttaagGTGAATTATGCTATTTTTCTAAGGAAGGCCCAGGTCACCATGGAAACGGCTTTAAATCCTGTAGGACTgggattttattttgaaaatttttaTCCTCTGGTTGTATCCTGAGATTTTTAccaaaatgatctttttttaatgtcatgctgctactgttgtgtattttataaatctaaataaagcTCTAAATGCATACGCAC
>TU424579
TGAAGGTCTCTGGTCCAAGAACTCATCATGAAGGTCTCTggggtgaagtggtgtgatgtggagcGCTGTGTGAGGTGGATGGTGCCATTTGCGATGGCGATACGTGAAGTTGGAAGCTCCTCCCAAAAAACGTTTAAAGGCATTCCAGCAGAGAACATGCACAACATCCAGagccacgccccctacctgGACTGGCTGGGAAAGGTACACTCTCATCAGCTGGAGGATTTGGAACATGGCCAGACCTCGCCCGTCCCGCCCGGAGTGTTGACTCCGCCCCCCAGCAGCGAGAAACCCGAGGACTCTTCGTCCTGACCGCTGCTCCGCTTCAGCtatgtggattgggacacgacCCACAGCCATGCTGTTCTCAGATCAGCTTTGAGAAACCTGCACAACTTTTTATTCTGATCTCTGCAGACTCCTAACCGCTTAATTCtgaatttttaaacatgtattatTGATCCACCGAGTCGCAGCCCGCCTACCGAATCCTCAGAGAGCCTCAGGGCCTGAATGCTGCTATAACGGAGGTGggacacacgcacacacacacacacacacacacacacaaaggattTTTGATGGATTAGATTTTATATTTCACACTTTCGGgggtgtttgtttgtgttaagGTGAATTATGCTATTTTTCTAAGGAAGGCCCAGGTCACCATGGAAACGGCTTTAAATCCTGTAGGACTgggattttattttgaaaatttttaTCCTCTGGTTGTATCCTGAGATTTTTAccaaaatgatctttttttaatgtcatgctgctactgttgtgtattttataaatctaaataaagcTCTAAATGCATACGCAC
>XM_034299453.1
TGACGTCACCCCGGTCACGCCCCTTTACCCGGCAAAAAGTAGGGAAAGTGTttataaagtaaatgttttatatcaGAGGCAGGAGTCAGAGAGGAGTGATGGCGTTGTAGGATGAATTTAAACTTCCggaagtgtttattttattgttaaagttttaatattacaagtttatttatttcttttttaaaaagcatgtctGTTTTTGAGTCGCGCGCCGCGAGTTTGCGCAGTTTATAAAGGCAAAGGCGCAAAATGAGGCTGAGAGCAGAGCAGCTAGGAGAggaacacacaccataacacacaccataacacacacacacacggggaaTAAGGAGCACACcttcctgaacacacacaggatcacaggcatgatgaagatgatgaagatgaagatggtGTGTGAAAGATCTTAACTTCTCTGCATCTGAAGTTTTTCCTGCACGCGCGGTTTGGAGGCTCTGTGAGGTGTGGAGACACAGCCCTGTGGATATAATGCCCAgtaagagtgtGTTAAACACACAAGTGAACAGCAGAACGGATGAAGCTCCTAAACCCAGCTCGGCTCGCTCCAGGAAGAGGAAAGCAGATGTTGCTATTCACTTACATGATCCGGATGAGGAAATTACAGAGGCGCAGACGAGAAAGAAGCCGTGTCCGCCCCAGGAGACGTGCCGGGATCAGACGGCGGCCTCCTCTCCACGCCAGGCGGATAAACCGGTTGGAATCGGCAGCGTGGGATTCACACACTACGCCAGCAGGAGTGTTTTCGTCACCCCGACACGGCCCTCGCCCCTGCCTGCCCTGTGTTGGGCGAGTAAAGACGACGTGTGGAGCAACCTGCTGAAGAAAGATAAACTTTACCTCCACAATGTGCATGTGATGGAGAGACACCCCAACCTGCAGCCCAAAATGAGGGCCATTCTGCTGGACTGGTTAatcgaggtgtgtgaggtgtatAAACTCCACAGGGAGACGTTTTATTTAGGTCAGGATTATTTCGATCGCTTCATGGCCACACAGAAGAACGTGCAGAAGTCCACGCTGCAGCTCATCGGCATTTCCGCTCTCTTCATCGCCGCTAAGATGGAGGAGATTTATCCTCCTAAAGTGCACCAGTTTGCGTATGTGACGGATGGAGCGTGTACGGAGGAGGAGATCCTCAGCATGGAGGTCATCATCATGAAGGAGCTGAACTGGAGTCTGAGTCCGTTAACGCCGGTGTCGTGGCTGAACATCTACATGCAGATGGCGTATCTGAAGGAGTTCACTGAAGTTCTCATGCCACAGTTTCCTCAGACCACGTTCGTACAGATCGCTGAGctgttggATTTGTGCATTCGGGGTTATGTATGTGTAGGGGTGGATGTGTCTCTGGTCCAAGAACTCATCATGAAGGTCTCTggggtgaagtggtgtgatgtggagcGCTGTGTGAGGTGGATGGTGCCATTTGCGATGGCGATACGTGAAGTTGGAAGCTCCTCCCAAAAAACGTTTAAAGGCATTCCAGCAGAGAACATGCACAACATCCAGagccacgccccctacctgGACTGGCTGGGAAAGGTACACTCTCATCAGCTGGAGGATTTGGAACATGGCCAGACCTCGCCCGTCCCGCCCGGAGTGTTGACTCCGCCCCCCAGCAGCGAGAAACCCGAGGACTCTTCGTCCTGACCGCTGCTCCGCTTCAGCtatgtggattgggacacgacCCACAGCCATGCTGTTCTCAGATCAGCTTTGAGAAACCTGCACAACTTTTTATTCTGATCTCTGCAGACTCCTAACCGCTTAATTCtgaatttttaaacatgtattatTGATCCACCGAGTCGCAGCCCGCCTACCGAATCCTCAGAGAGCCTCAGGGCCTGAATGCTGCTATAACGGAGGTGggacacacgcgcacacacacacacacacacacacacacacacacacacacacacacacaaaggattTTTGATGGATTAGATTTTATATTTCACACTTTCGGgggtgtttgtttgtgttaagGTGAATTATGCTATTTTTCTAAGGAAGGCCCAGGTCACCATGGAAACGGCTTTAAATCCTGTAGGACTgggattttattttgaaaatttttaTCCTCTGGTTGTATCCTGAGATTTTTAccaaaatgatctttttttaatgtcatgctgctactgttgtgtattttataaatctaaataaagcTCTAAATGCATACGCA

Function

symbol description
ccne1 Enables kinase activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division and regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in anterior axial hypoblast; intestine; nervous system; notochord; and polster. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human CCNE1 (cyclin E1).

NR:

description
G1/S-specific cyclin-E1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
TU424532 False 1304 TUCP 0.50 11 344118 348676
TU424577 False 857 TUCP 0.47 3 348769 351769
TU424578 False 837 TUCP 0.47 4 348769 351769
TU424579 False 835 TUCP 0.47 4 348769 351769
XM_034299453.1 True 2218 mRNA 0.49 13 344062 351768

Neighbor

gene id symbol gene type direction distance location
si:ch211-260e23.9 LOC108259284 coding upstream 5421 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 20732 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 37299 299673 ~ 306763 (+)
nae1 nae1,LOC107562208 coding downstream 11116 362885 ~ 376246 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding downstream 54210 405979 ~ 420868 (+)
tk2 tk2 coding downstream 114771 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 601436 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 952112 1303881 ~ 1433318 (+)
G358312 NA non-coding upstream 57535 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 69439 273454 ~ 274623 (+)
G358305 NA non-coding upstream 163912 179938 ~ 180150 (+)
G358304 NA non-coding upstream 164748 179026 ~ 179314 (+)
G358289 NA non-coding upstream 205731 135381 ~ 138331 (+)
G358344 NA non-coding downstream 27461 379230 ~ 424643 (+)
G358338 NA non-coding downstream 39564 391333 ~ 394621 (+)
LOC117596071 NA non-coding downstream 47578 399347 ~ 400856 (+)
G358359 NA non-coding downstream 133966 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 193807 545576 ~ 548885 (+)
cmtm4 cmtm4 other downstream 75104 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1969355 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2284520 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2433858 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2893941 3245710 ~ 3300683 (+)

Expression


Co-expression Network