G358289


Basic Information

Item Value
gene id G358289
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 135381 ~ 138331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU424496
CGTTCAGGCTGGCGGACACAGCGGGCCCTGTCCTGGGGCTCTGTCCGCTCAGAGACTCGCGGCAGAGGAACGGTCTCTTCGGGTCCAGCAGAACTTTATCACTTTTCAGCACCAGTCCGGGCACGAGAGCCTTCAGCGGCCCGGTAACGGCGAAGCTCGTGGCCTGTAAGTAGGGCGATAACGGCCCCGCGCGCGCAGCGACCGACATCATCGTTCCTGCCTGTAGGACTGCTCCAGCGGCCGAGGGGCGGGGCTTCTTCTCCTCGGGAAACAACTTCCGCTCAACGTTCCGAACGTCATGGCAGCGTGGTGACGTAATGACGCACCAGACGCCGGAGGCTTCAATCAGCCGTCTCTCGGAGCCCCAGTAACACATTAGTGTGCACTTAACGCCGCCCTGAATGCGTCTGTGTAATTGATAAGGAGGCCGAGAGTGACGTATCTAAATGGAAATCTGAAgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424496 True 461 lncRNA 0.60 2 135381 138331

Neighbor

gene id symbol gene type direction distance location
LOC113525130 NA coding downstream 161342 299673 ~ 306763 (+)
plekhf1 plekhf1 coding downstream 182205 320536 ~ 323330 (+)
si:ch211-260e23.9 LOC108259284 coding downstream 192656 330987 ~ 338641 (+)
nae1 nae1,LOC107562208 coding downstream 224554 362885 ~ 376246 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding downstream 267648 405979 ~ 420868 (+)
G358290 LOC105905159,LOC107565776,LOC108264773,LOC107741896,LOC108412826,LOC105889141 non-coding upstream 820 133431 ~ 134561 (+)
G358286 NA non-coding upstream 69454 65658 ~ 65927 (+)
G358282 NA non-coding upstream 74486 60658 ~ 60895 (+)
G358281 NA non-coding upstream 74827 60141 ~ 60554 (+)
G358277 NA non-coding upstream 89785 44768 ~ 45596 (+)
G358304 NA non-coding downstream 40695 179026 ~ 179314 (+)
G358305 NA non-coding downstream 41607 179938 ~ 180150 (+)
LOC113525132 NA non-coding downstream 135123 273454 ~ 274623 (+)
G358312 NA non-coding downstream 145912 284243 ~ 286527 (+)
G358331 NA non-coding downstream 200492 338823 ~ 436472 (+)
ccne1 ccne1 other downstream 205731 344062 ~ 351769 (+)
cmtm4 cmtm4 other downstream 288542 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 2182793 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2497958 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2647296 2785627 ~ 2823338 (+)

Expression


Co-expression Network