G358331


Basic Information

Item Value
gene id G358331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 338823 ~ 436472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU424557
GTGGTTAGGGACGGGGTTCTGTGATTATAATCATGCTGTCACTGTTATTGCTCGATTGGTTGTGGAGCCGATACGAGCGTGCAGTCTGCAGATCTGACTGCAGATTTTAAAGGtagttaataagttaataaactTAAGATTCGCAGGTGAAATTGGTCTccaggcaaaaataaaaataaaatattgaattttaatCTCTGACATTTATAACAAATaacttgagtgtgtgtgtgtatgtgagtgtgtgtgtttctcttttagCTTAGCCGTAGCTGATACACTCAAGTTTTAGCATGAAACTTATGCAATACTTTAATTAAactctttttattaattacgATTTTGTGAAAGTTTTAGAAAATTTTAACTCCACAGACGTGAAATTTCggtgtgatttctgtgtgtgtgtgtgttttagctttGATAAACGTTAGAGTTagcgtgtgtgtattttgtgtaagAAACAAAGCCTTTACAGATTAAAGCCGAAACGAGACGGCCTGCTGTTTGTGAGAAACATGTTTAAgtccaaaaaaatatttaaaatagagCATGTGTTTacaaacatatatttatatatacatattgtgtgtgtgtgtgtgtgtgtgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424557 True 611 lncRNA 0.34 2 338823 436472

Neighbor

gene id symbol gene type direction distance location
si:ch211-260e23.9 LOC108259284 coding upstream 182 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 15493 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 32060 299673 ~ 306763 (+)
tk2 tk2 coding downstream 30068 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 516733 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 867409 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1454102 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1584248 2020720 ~ 2174969 (+)
G358312 NA non-coding upstream 52296 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 64200 273454 ~ 274623 (+)
G358305 NA non-coding upstream 158673 179938 ~ 180150 (+)
G358304 NA non-coding upstream 159509 179026 ~ 179314 (+)
G358289 NA non-coding upstream 200492 135381 ~ 138331 (+)
G358359 NA non-coding downstream 49263 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 109104 545576 ~ 548885 (+)
G358478 NA non-coding downstream 196016 632488 ~ 632693 (+)
G358508 NA non-coding downstream 440784 877256 ~ 914967 (+)
G358513 NA non-coding downstream 472024 908496 ~ 946514 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1884652 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2199817 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2349155 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2809238 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 3277180 3713652 ~ 3767714 (+)

Expression


Co-expression Network