G358344


Basic Information

Item Value
gene id G358344
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 379230 ~ 424643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU424576
aaaaaaaaaaataaaaaaaaaaaaattggaaccAAAGATGTgcgatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtcatGGTCGGCGTCCCAAACACACCCGGTggtgtttcattttaatatttttcttccaCCTGGTGAAATCGTCATCATTCCTGCACTCACGCTGTTTATCTTCACTCGTCTTTCTCGCTGCGTTTATTTCCAAATCCTctcttactaaaaaaaaaaaatactaataataaaaaaattccccTCTCTAttactttttgtttctttaaggGAAAAGACCACAAGGTGTGCAGAgtctacttttttatttttattaattttgcatggttattattattattattattattattattattatttgctgtaTAAAAAAAGATTCCGATGGAGATTTGtaagattttctttctttcctgcgCATTTGCAAGCACACAGTCTGGACTAATTCACATGTTTAGTTGTTAAAGCACTTCCAATAAAAGCGCATTATAATAAACTCCAGTtacactgcagctgtgtgtcAGTAAATAAACTCACATCCACATTACTGCTAACATTTTATCACAGTTTATGATATTATTTGTGGAACGTGACGGTCTTTGGGGTTCCATCAGGAGTGATTGTAAGCCAGCGGAACGGTTTGTGCTGAATATCGTGATTTTATCGCGTAGCTGATGATCGACACGCCGTTCTGCTTTACAGCTCAGTTTCCTCACATGTATCTGAAactcttcagtgtgtttatggaAAAGCTGAATTCTGTAAGTGAGATGAAATGAAGCCTTCgaatgtgtttttaatcagaATTCAGGATGTGCAGAAggatcaggcttttttttttttgtttgtttttttttttttattacagtgagTTTTGTATGTAAATTGAtctcaaagaataaaaaagttcAGTGTGTAAGACACGTCAGATAGAGCAGGATTTTTTATTATACGCTGTATAATGTGTAACTGAAGCACTTCCCCTCATCAGCAGCAAACAGAACGAGTCCAGTTCCTGTATTAACGGGTTTTCACACTTTCTCTGTGTATTAAATCGGTGTGACTGTACGCCTTTTTCCTGATGCAGTATAACGGTTCTGCAGAGTCGCTCGCTTTTCTGCCAATAAAGCAAAAGGAAACAGCTTCAATAAAACATCCAGACTCCACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424576 True 1224 lncRNA 0.37 2 379230 424643

Neighbor

gene id symbol gene type direction distance location
nae1 nae1,LOC107562208 coding upstream 2984 362885 ~ 376246 (+)
si:ch211-260e23.9 LOC108259284 coding upstream 40589 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 55900 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 72467 299673 ~ 306763 (+)
tk2 tk2 coding downstream 41897 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 528562 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 879238 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1465931 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 1596077 2020720 ~ 2174969 (+)
G358312 NA non-coding upstream 92703 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 104607 273454 ~ 274623 (+)
G358305 NA non-coding upstream 199080 179938 ~ 180150 (+)
G358304 NA non-coding upstream 199916 179026 ~ 179314 (+)
G358289 NA non-coding upstream 240899 135381 ~ 138331 (+)
G358359 NA non-coding downstream 61092 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 120933 545576 ~ 548885 (+)
G358478 NA non-coding downstream 207845 632488 ~ 632693 (+)
G358508 NA non-coding downstream 452613 877256 ~ 914967 (+)
G358513 NA non-coding downstream 483853 908496 ~ 946514 (+)
ccne1 ccne1 other upstream 27461 344062 ~ 351769 (+)
cmtm4 cmtm4 other downstream 2230 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1896481 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2211646 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2360984 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2821067 3245710 ~ 3300683 (+)

Expression


Co-expression Network