G358720


Basic Information

Item Value
gene id G358720
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 1607639 ~ 1607911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425001
gtagctttacagtttcccttcactggaactaagaggccgaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccgacatcagcgcctgacctcactaatgctcttgtagctgaatgaacacaaatcccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425001 True 273 lncRNA 0.52 1 1607639 1607911

Neighbor

gene id symbol gene type direction distance location
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding upstream 174321 1303881 ~ 1433318 (+)
cdh11 cdh11 coding upstream 612408 953205 ~ 995231 (+)
tk2 tk2 coding upstream 1130667 466540 ~ 476972 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 1186771 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 1231393 362885 ~ 376246 (+)
LOC117596061 NA coding downstream 282663 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 412809 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 570067 2177978 ~ 2203598 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding downstream 679159 2287070 ~ 2298515 (+)
mylk3 mylk3,LOC106587297,LOC107690728 coding downstream 739910 2347821 ~ 2384488 (+)
G358713 NA non-coding upstream 157174 1450155 ~ 1450465 (+)
G358587 NA non-coding upstream 367501 1239914 ~ 1240138 (+)
G358577 NA non-coding upstream 467281 1140007 ~ 1140358 (+)
G358519 NA non-coding upstream 635293 971580 ~ 972346 (+)
G358518 NA non-coding upstream 663617 939236 ~ 944022 (+)
G358726 NA non-coding downstream 107635 1715546 ~ 1715887 (+)
G358796 NA non-coding downstream 317897 1925808 ~ 1928313 (+)
G358828 NA non-coding downstream 372309 1980220 ~ 1980594 (+)
G358834 NA non-coding downstream 389292 1997203 ~ 2003714 (+)
G358858 NA non-coding downstream 585252 2193163 ~ 2193423 (+)
cmtm4 cmtm4 other upstream 1155625 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 1255870 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 713213 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 1028378 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 1177716 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 1637799 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 2105741 3713652 ~ 3767714 (+)

Expression


Co-expression Network