G358858


Basic Information

Item Value
gene id G358858
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2193163 ~ 2193423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425171
GTCAACATGCTACCttttatgcacacatacatgtacTGTTAAggatattttacattaatgagGCTGTAATTTGGGTTTATACTACAGAGCTGTTGAAGTATTAGAAAATTAGAAGGTGctgaataattttctttaacagcagctctgacactagttccagctataacataaatgattttttatattaatgcactttatagtaacagatcattcacagaaacttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425171 True 224 lncRNA 0.31 2 2193163 2193423

Neighbor

gene id symbol gene type direction distance location
itfg1 itfg1,LOC103369364,LOC107395746 coding upstream 18194 2020720 ~ 2174969 (+)
LOC117596061 NA coding upstream 288572 1890574 ~ 1904591 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding upstream 759845 1303881 ~ 1433318 (+)
cdh11 cdh11 coding upstream 1197932 953205 ~ 995231 (+)
tk2 tk2 coding upstream 1716191 466540 ~ 476972 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding downstream 93647 2287070 ~ 2298515 (+)
mylk3 mylk3,LOC106587297,LOC107690728 coding downstream 154398 2347821 ~ 2384488 (+)
vps35 vps35 coding downstream 199033 2392456 ~ 2431492 (+)
LOC117596027 NA coding downstream 241210 2434633 ~ 2435076 (+)
slc7a10a slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615 coding downstream 276692 2470115 ~ 2504561 (+)
G358834 NA non-coding upstream 189449 1997203 ~ 2003714 (+)
G358828 NA non-coding upstream 212569 1980220 ~ 1980594 (+)
G358796 NA non-coding upstream 264850 1925808 ~ 1928313 (+)
G358726 NA non-coding upstream 477276 1715546 ~ 1715887 (+)
G358720 NA non-coding upstream 585252 1607639 ~ 1607911 (+)
G358902 NA non-coding downstream 173260 2366683 ~ 2366926 (+)
G358903 orc6 non-coding downstream 191875 2385298 ~ 2387176 (+)
G358908 NA non-coding downstream 240658 2434081 ~ 2434290 (+)
G358965 NA non-coding downstream 398641 2592064 ~ 2592271 (+)
G359293 NA non-coding downstream 501051 2694474 ~ 2696538 (+)
cmtm4 cmtm4 other upstream 1741149 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 1841394 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 127701 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 442866 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 592204 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 1052287 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1520229 3713652 ~ 3767714 (+)

Expression


Co-expression Network