G358903 (orc6)


Basic Information

Item Value
gene id G358903
gene name orc6
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2385298 ~ 2387176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425218
gaaaattaatcaacaccttctgaccaatcagaatctggAGTTTGACAGTACATCTTTCTTTAGAACACCTGTTTAAGGCTGTTATAGGATGGCAAACTATTTTTTAGCAAGCATTCTTTCCTAAAATGGTAGCTGTTCTCTgtgaacacatcacacacacacacacacacaaacacgctttgatcatttagttttattaaaacatcagCGGTACAGAATCATGCTGCAGGATTTCCTTTAGAGATGATGAGCGCACGctcacccactcacacactcacacactcacacacaactgtgTGACTGTGACCACAAACGCTCACATGAACCTCTTCACACTGCCACACGAGACACTTGATGCGAACGAGTCACAGGTAATGAGGCAGTTGATTAAAACGCAGCCGAGTCTACACATGAACAATGAACATCATCAAACCTCTCAGACACGGCTGAATATAAAGCAGCGCTCGGCTGCTCTTCTCACTCCCAACAATGCGTTAAAAATCATCTCCGTCAACGCAATCAAGTGAAATAATACAGCAGAGTGAATATCTGTACACACAGGTCAGGTTCGCCtgctgacactgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtacatgtgggaaaatgaaatcaaattcaaattgaAGAAAAGggcaatgtttaaaaaaaaaaaaaaaaactaaaaacatgacataaataataatcattaaaaaactcTAACAGGTGCAGCCAGCACTATCCGCTGCTTTTGGCTTTGAGAGCGTTTTCCAGGATTTTTCTCTTCCACTCCTCGTAATTTTGTTTCGTCTCTTCCTCACACTCGTCTTCCCTCAGTGCCGGTTCCCGCTGTTGCTTAGGAGACATTGGCAAGCCAtcgtCTCCATTCTTCCGCTCACCCTCCTCTGCTTCCTGCAGCGTCTCAGTCAGAGTCTTCGGTCTCTTTTGTGTTGATTTCATCTGTCGCTTCACAGAAGATGCgtcacctgagagagagagagagagagag
>TU425219
gaaaattaatcaacaccttctgaccaatcagaatctggAGTTTGACAGTACATCTTTCTTTAGAACACCTGTTTAAGGCTGTTATAGGATGGCAAACTATTTTTTAGCAAGCATTCTTTCCTAAAATGGTAGCTGTTCTCTgtgaacacatcacacacacacacacacacaaacacgctttgatcatttagttttattaaaacatcagCGGTACAGAATCATGCTGCAGGATTTCCTTTAGAGATGATGAGCGCACGctcacccactcacacactcacacactcacacacaactgtgTGACTGTGACCACAAACGCTCACATGAACCTCTTCACACTGCCACACGAGACACTTGATGCGAACGAGTCACAGGTAATGAGGCAGTTGATTAAAACGCAGCCGAGTCTACACATGAACAATGAACATCATCAAACCTCTCAGACACGGCTGAATATAAAGCAGCGCTCGGCTGCTCTTCTCACTCCCAACAATGCGTTAAAAATCATCTCCGTCAACGCAATCAAGTGAAATAATACAGCAGAGTGAATATCTGTACACACAGGTCAGGTTCGCCtgctgacactgacacacacacacacacacacacacacgtacatgtgggaaaatgaaatcaaattcaaattgaAGAAAAGggcaatgtttaaaaaaaaaaaaaaaaactaaaaacatgacataaataataatcattaaaaaactcTAACAGGTGCAGCCAGCACTATCCGCTGCTTTTGGCTTTGAGAGCGTTTTCCAGGATTTTTCTCTTCCACTCCTCGTAATTTTGTTTCGTCTCTTCCTCACACTCGTCTTCCCTCAGTGCCGGTTCCCGCTGTTGCTTAGGAGACATTGGCAAGCCAtcgtCTCCATTCTTCCGCTCACCCTCCTCTGCTTCCTGCAGCGTCTCAGTCAGAGTCTTCGGTCTCTTTTGTGTTGATTTCATCTGTCGCTTCACAGAAGATGCgtcacctgagagagagagagagagagag
>TU425220
gaaaattaatcaacaccttctgaccaatcagaatctggAGTTTGACAGTACATCTTTCTTTAGAACACCTGTTTAAGGCTGTTATAGGATGGCAAACTATTTTTTAGCAAGCATTCTTTCCTAAAATGGTAGCTGTTCTCTgtgaacacatcacacacacacacacacacaaacacgctttgatcatttagttttattaaaacatcagCGGTACAGAATCATGCTGCAGGATTTCCTTTAGAGATGATGAGCGCACGctcacccactcacacactcacacactcacacacaactgtgTGACTGTGACCACAAACGCTCACATGAACCTCTTCACACTGCCACACGAGACACTTGATGCGAACGAGTCACAGGTAATGAGGCAGTTGATTAAAACGCAGCCGAGTCTACACATGAACAATGAACATCATCAAACCTCTCAGACACGGCTGAATATAAAGCAGCGCTCGGCTGCTCTTCTCACTCCCAACAATGCGTTAAAAATCATCTCCGTCAACGCAATCAAGTGAAATAATACAGCAGAGTGAATATCTGTACACACAGGTCAGGTTCGCCtgctgacactgacacacacacacacacacacacacacacacacacacacacacgtacatgtgggaaaatgaaatcaaattcaaattgaAGAAAAGggcaatgtttaaaaaaaaaaaaaaaaactaaaaacatgacataaataataatcattaaaaaactcTAACAGGTGCAGCCAGCACTATCCGCTGCTTTTGGCTTTGAGAGCGTTTTCCAGGATTTTTCTCTTCCACTCCTCGTAATTTTGTTTCGTCTCTTCCTCACACTCGTCTTCCCTCAGTGCCGGTTCCCGCTGTTGCTTAGGAGACATTGGCAAGCCAtcgtCTCCATTCTTCCGCTCACCCTCCTCTGCTTCCTGCAGCGTCTCAGTCAGAGTCTTCGGTCTCTTTTGTGTTGATTTCATCTGTCGCTTCACAGAAGATGCgtcacctgagagagagagagagagagag

Function

symbol description
orc6 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425218 True 1042 lncRNA 0.44 2 2385298 2387176
TU425219 False 1006 lncRNA 0.43 3 2385298 2387176
TU425220 False 1022 lncRNA 0.43 3 2385298 2387176

Neighbor

gene id symbol gene type direction distance location
mylk3 mylk3,LOC106587297,LOC107690728 coding upstream 810 2347821 ~ 2384488 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding upstream 86783 2287070 ~ 2298515 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding upstream 181700 2177978 ~ 2203598 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding upstream 210329 2020720 ~ 2174969 (+)
LOC117596061 NA coding upstream 480707 1890574 ~ 1904591 (+)
vps35 vps35 coding downstream 5280 2392456 ~ 2431492 (+)
LOC117596027 NA coding downstream 47457 2434633 ~ 2435076 (+)
slc7a10a slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615 coding downstream 82939 2470115 ~ 2504561 (+)
cln6a cln6,cln6a,LOC108432377,LOC107563453,LOC107553103 coding downstream 177381 2564557 ~ 2572740 (+)
calml4a calml4,calml4a,LOC103029589,LOC107740452,LOC107563455,LOC107553107 coding downstream 185694 2572870 ~ 2575409 (+)
G358902 NA non-coding upstream 18372 2366683 ~ 2366926 (+)
G358858 NA non-coding upstream 191875 2193163 ~ 2193423 (+)
G358834 NA non-coding upstream 381584 1997203 ~ 2003714 (+)
G358828 NA non-coding upstream 404704 1980220 ~ 1980594 (+)
G358796 NA non-coding upstream 456985 1925808 ~ 1928313 (+)
G358908 NA non-coding downstream 46905 2434081 ~ 2434290 (+)
G358965 NA non-coding downstream 204888 2592064 ~ 2592271 (+)
G359293 NA non-coding downstream 307298 2694474 ~ 2696538 (+)
G359324 NA non-coding downstream 444107 2831283 ~ 2832473 (+)
G359335 NA non-coding downstream 477038 2864214 ~ 2903768 (+)
cmtm4 cmtm4 other upstream 1933284 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 2033529 344062 ~ 351769 (+)
igdcc4 LOC108259659 other downstream 249113 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 398451 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 858534 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1326476 3713652 ~ 3767714 (+)
fto fto other downstream 2199431 4586607 ~ 4764886 (+)

Expression


Co-expression Network