slc7a10a (slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615)


Basic Information

Item Value
gene id slc7a10a
gene name slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2470115 ~ 2504561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937424.2
TGCACGTCTCGTGAACTAAATTCACTGATCATTGAAagctttttccttctttcttctgaaCAAACAAAGCCGTTTGGAGCTCGCCGTCACTTCCGGTTTCTTTGTACTCGGGACAGACAGGTGCGCTCCAGGTGTCAGGTTAACGCGCGCGCGCTTTCCTCAGGATGCGACCAGGCGCAACTTGGCGCGTGTTCAAGAGTGGATAgggtttgtttctttttgcgCATGCGCAGCGCGCGCCGCACATCCGCCTGCTATATGAGAGCGAACTCGggcatgttttaatttttttttaaaacactcttCGAGATGGACGGGACCGAGGCGAACCGGAGGAACTGCACGAGGAGCGACGCGGTCGCAGATCCGGGCCAAGACCAGAAAAGCGGCTCGAAGGACCGCGTGACACTTAAGAAGGAAATCGGTTTGATGAGCGCGTGCGCTATTATTATAGGTAACATCATTGGCTCAGGTATCTTCATCTCTCCAAAGGGGGTTCTGGAGCATGCCGGCAGCGTGGGCTTCTCCCTCATCGTCTGGGTCCTCGGTGGAGGCATCTGTGCTCTGGGCTCACTGTGCTACGCCGAACTGGGTGTCACCATCCCCAAATCTGGGGGAGATTACTCCTACGTGACGGAAATCTTTGGAGGACTGGTGGGGTTCTTGTTGCTGTGGAGTGCAGTATGGATAATGTATCCTACCACGCTGGCTGTGATCGCCCTCACTTTCTCAAACTACGTCCTGCAGCCGGCGTTTCCAAACTGCCTTCCTCCCTATATCGCCACTCGCCTTCTGTCCACTATCTGCATCTtgctgcTGACGTGGGTGAACTGCTCCAGTGTTCGCTGGGCCACACGCATCCAGGATTTCTTCACCATCGGGAAACTGCTCGCTCTTGTTCTCATTATTGTAGTGGGCATGGTCCAAATTTGCAAagGGCACTATGACGCTCTGGAGCCTCAGACAGCGTTCGAGTTTATCCGAGAGCCGTCAGTGGGGCAGATCGCTCTGGCCTTCCTGCAGGCCTCGTTCGCCTTCAGCGGCTGGAACTTCCTCAACTACGTCACCGAGGAAGTGGTGGAGCCACGCAAGAACCTGCCACGTGCAATCTACATCTCCATTCCTCTGGTCACGTTAGTGTACACTCTCACTAACATCGCCTACTTCTCCTCCATGACCCCCGAGGAGCTGCTCGCGTCCAACGCCGTCGCAGTGACGTTTGGTGAGAAGCTGTTGGGGATGTTCTCCTGGGTCATGCCCATCTCTGTGGCTCTGTCCACGTTCGGAGGGATTAATGGCTACCTGTTCACGTCCTCCAGGTTGTGTTTCTCTGGAGCGAGAGAAGGACACCTGCCCTACCTGCTGGCTATGATCCATCTGAAGAACTGCACACCCATCCCGGCTCTGCTCGTCTGTtgcACTGCGACCATCGTCATCCTCTGTATTGGCGAAACCCACAACCTGATCAACTACGTGTCTTTTATAAACTACCTCTCATACGGAGTGACCATCGCCGGCCTGCTGTACTATCGCTGGAAGAAACCCAATCTCGTCAGACCAATTAAGgtgaaTTTGCTGGTCCCCATCAGTTACCTGGTGTTCTGGGCCGTGTTGCTGTGCTTCAGTCTGTACTCGGAGCCTGTGGTGTGTGGGATGGGGCTCGTCATCATGCTCACCGGAGTCCCTATCTACTTCATCGGAGTGCAGTGGTCAAAAAAGCCGCGCTGGATCTACAGCGCAGTGGagtGTGTGACGTATTTGGGCCAGAAGCTGTGTTATGTCGTGTTCCCTCAGGACGATCCCTCCGAAACGGAGCCTCTCACAGAGAAAACTGAGAAGTCGGAGCTCTGAAGCGTCAAACCTTCCAGGGAAACTTtgtcccccctttttttttttttttttttaaatattacggGGTCAAAAAAACCCACCCAGAAAAGCAGCAGTTATTAACTCAGAGTTTCTTGTGCAGGTGATGAGACGGATTTCTCTACGGTGCTCTAGGTTccagtttaaattttttttaagtgtgtaaaGAAAGAGAGTCCTATTGAGGGGAGATGCATGTTGTCTTTTTATTATTCCGGGCTTTTCTCGTCTTTTCCGCTGGCTGCGGATGTCGGAATGTGTAAAACGAACCCTTTTGTCCTCACAAAAGGAACTGGTTTCCACCGACCTCCTCTCGTTGCTACCTGGAGGCCATTCCCGATTTAAAATACGGGGCATGTGTTCTCTTGAGCCATGCAGgatcttttgtttttctgttctttgtttattaatgaCTACCGGCCCATAactttcagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagttttCTCTTTCATATACAGTCCCTATATATATGGCATGTGGCCATAAATCCTTAAGTTGCACcacagggatgtgtgtgtgcatttaatttttagtttttgggttttttagAAAAGTTCAGATCTGTATCAGGTATCCTTAAAACTGGTGTGTACTTTTTAAACAAGGTgaaaatctgccattttttgATACTTTAGAGCATttctgtagcttttttttttttgaagacagATAACCTTAAAACCCATTAAATAGCCTTTCTCAAAAACTTAATACTCAAATATAACAAATACCTAAAACTATACTCATATCATTAAGAGTAAAAGTTGTTTTTTGCATGACTATTTCAACAAGAGTAAGAGGATAGGAGTAAGtagtatagtattattattatcattattattatcgttaTTTACCTTTCAGCATAAGACAGTGCTGATGCTGATAAGTTCAAAACCAtctgaaaaaatttttttaaatggaaattattttaaatcgTTATACTGCATACAGCTCTCGTCTGTGCATTCTCTGCTTGCTAGCTACTTGATAGATGTTAGCAGTGAGCGTTATCGTCGACTAGGGCtgtcaaatatttttctttaaaattttatataatttatttgagttttaatttagtatttgtATGTCTATGAATATTATTGACAGAATGAATATTAGCAGCTCTTTTGATAACAACAGTGTCACTTTCTTAAGCTAAGAAATCACAAGATTATCaagtttatcattttattttaaacattaatattttagattcagttttatttatttttctcacagTGATAGGTCATCTTCAACTTTGACATCTTCatgcacaaatatttattatgttgaTTTTTACTCCTCAGAAATCATTTGCACGAATCACAACCATATGCTCACTAGGGAAACATATGCACTTCATGACCAGTAGAGCTCCATTTGGGAAAGAAGACTAGCGGAAAGCATGGAACAGAAAGAGACGTAACAGAAAGAATATtaagggaaagaaaaataacGGAAAGATAAGTAGGGGAAAGAAATTTTGGGGATAGCCAAATTTAATCagctaaaaatatttcttttcttttcaactTGACTCGAATGAAACCAAAAAGCCTCGTACACTTCGTTTATTCAAtaaagttcattcattcatcttcagtaagcactttatcctggttagggatGTGGTGGCTCCAGAGTCTGTCCCGGGAACGCTGAGCGTGAGGTGGGAaaacatcctggatgggacgccagttcaGAACAGTTTGAAAATAGCAATTTGAAAAAGCTACTTAAGTAAATGTAACGGCGTAAACATAGAGAATTACAACTCACCGCTACCGAACCTCCATTATACATACAACAAAGTTCGTGTGTTAATATGCAATGATTATTTACAATCTTTTCTTGAGCGCTAAAAGCGTGTAAATGAAACTGGTTACTTTGTGGCCAATGtgacttttaaagaaaaaatcgTAACCGTACTCAGGTTACGCAAAATATACACTTTGTTAcagaaatttaatttcattacatttctaaaatgaaaaaaagttttgttagTGATTCCTCAAAACAGTACATGCAGGTGTCATGTGCaaatttgtaatgtaaaaaaaaacccttcagatATTTTTACGACAAACGTTTTAAATACAAACCCCTCTGCTGATGAAGTTAcactacgttcacactagcaagaaACAAGTCACTAGTGTCGTTTGTAGTTTGTCACTTATGGGCGTGGCCTGTCGAgcgttgtttttatttatttccgaTGGAAAATGGTAGTAGCTACACCTCCAATAGCTAACAATAGTTAAACACTatttaaataacacactaatcagtgtgaaatgtgGCTGTTTACATATTATGCACTTAGCTTCGTACTAGCTTCATTGGCTGATTAgcaactgtactagctacgtacgcTCACCAGAGACACCAACGATCTTTGCTACTTCCttgcaagctttatttttcttcgtaatgtctcAAATGGTGCTTGCCACTGTTGCTGAAATCATGACTCCGTGACACGCACTTACGTACAAGAACAACACTCGCCTGTTACTTTGTCGCCCTCTAGTGTGAACGTAGTGTTGCTTACTCTATACTACGGATGTTTGACTGAAACCAGGCGAGACAGGCGTGTGCTGAAAAGTGTGATCAGAGCCATGTgatggtgtaaatgtgtgtgagataatGCTGCAGTTGCCTCCTACATGATGATCACGCACTCTGTAATGTAGATGTTTGTTGTATATGTGTGCTTTTTAACTCATTATTTTTGATCCGTGTtgaaatgtaacatttacacacaaatttggttctaatgctgcatttgtgACTGAGTGGGAAGTTTCTGACTTCTGGTTATAACATAGTTACCGCTCAGAACGTCTGAAGAGTTGCCCATAGTGCTATGTATCTAGGGCTCCATGTTCCTATTGTTCTATGTTCCCAGGGGATTCGTAGGTTCCAAAGGGTTCTATGCTCCTAGAGCCATATCCTGCTGCCTATCTTCCAGGAGCCTATGTTCCCGTGTTCCTAGAACCTTATGTTTCTTCATTTCTACGTTCCCAGGGTCCTGTGCTCCCCAGACCTTATTTATCTAAGGTACTGTGCTCCCAGAATCCTATTTATCTACATATTTATGTTACCATAGTTCTATTTACTATGGTTTTATGTTTCCAGTGCCCTATGTATCTCGGGTACTATGTTCTCAGTATCCTATGTATCTAAGGTTCTATGCTTCCAGGGCTTTAGGTTTCCAGATCTTATATTCCAAAGGGATCTGTGCTCCCACAGGCATATCCTGGTGCCTGTCTTCCAAGAGCCTATGTTCCCATGTTCAGAGAACCCCATGTGTCTATCGTTCTTTATTCCCAGTGTTCTATATTCCCAGGACCCTATATATCTATGGTCCTATATTCCCAGAACCCTATCTTCTCATTATCACATGTTCCCAGACCCCTATGTATCTAAAGTTCTATGTTCCCAGTACCCTATGTATCTAGGGTGCTATGTTCTGAGAGCCATATCCTGGTGCCCATGTCCCCCGAGTCCTCTGTTCCCATATTCCCAAGTGCTATGTCTTTTGGGTTCTATGTTCCCAGGGTCAATGTTCCCAGACCCCGCACTCCTTCTTTCCCAGGGCTGATGTTCCTAGAGCTGGTTGTTCTCAGGGTCCTATGTTCCTTCACTGAAATTTTATAGGAACTGGTCCTGTGTGGTGGTGCCCACAGTCCAGAGAAGAAACTAGAGGCACGTTTTAAGCCTTTAAAAGACTTTAGATATTCTGTTTGTGTatggtttgttttattttaagatctATAGGAGGATAGTTGGATCACTAAAAGGTTTGTTAAACTGGCATGTTCTTTTTGGGCGCaattaacaataaattaaaaaatctcCATCTTGCATCTACTTTTAACATAATTTACTAACCAAACAACTCTTCTGGcatttttaaaagctatttGAGGATTTTTTATCAACAAAGGAGACATTTAAAACACTAGCTTACTGTTAATTGGAATTGTTTTCTGGAAAATACTGACCACGCAGTTTTCATGAATGCAGCATAGCACCActtttacagttttgtttttctagATTTGTCATATGATACATTTTCAGAGTGTTCCTGTGGTTTGTGAAATTGTTTTGACGTTTGGGGTTGTAAGGTGTTTTTTAACCTGAGACATTTTATCAGTGGATGCAAAAACAAGCAAGCAGAAGTGAATAGAGTTTGTGTTAAAGACATCTGATGAATGTGAATGTATTTCATCTAACTCCAGCACTTATTCCTTAAACCGTCAGGTTTAAAGTcactttaatatgaaattataatTTGTTAACCAAATCCCAGTTAATGAGCCATTGTAATGTATCTATGCAAACAGAGGTTTAATCACTTTAatggtttattaatattttttagagTTATATAGTAACTTACTTGCTGCAGTAACGTGCCACTGCCAGTGAAAGTTAGATTGTACTTTTCCGATCCCAGGAACTCGGCCACGTTTCTTCTTattgcattttgaattttagAGACACATTAacgattacagtgtgtgtaaataactgattatttaatagttttttttttt

Function

symbol description
slc7a10a Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in D-alanine transport; D-serine transport; and amino acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A10 (solute carrier family 7 member 10).

NR:

description
PREDICTED: asc-type amino acid transporter 1

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13782 SLC7A10, ASC1; solute carrier family 7 (D/L-type amino acid transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937424.2 True 6480 mRNA 0.42 11 2470115 2504561

Neighbor

gene id symbol gene type direction distance location
LOC117596027 NA coding upstream 35039 2434633 ~ 2435076 (+)
vps35 vps35 coding upstream 38623 2392456 ~ 2431492 (+)
mylk3 mylk3,LOC106587297,LOC107690728 coding upstream 85627 2347821 ~ 2384488 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding upstream 171600 2287070 ~ 2298515 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding upstream 266517 2177978 ~ 2203598 (+)
cln6a cln6,cln6a,LOC108432377,LOC107563453,LOC107553103 coding downstream 59996 2564557 ~ 2572740 (+)
calml4a calml4,calml4a,LOC103029589,LOC107740452,LOC107563455,LOC107553107 coding downstream 68309 2572870 ~ 2575409 (+)
rfx7a rfx7 coding downstream 82286 2586847 ~ 2610174 (+)
nap1l4b nap1l4,LOC108259663,LOC108432411 coding downstream 108971 2613532 ~ 2627644 (+)
igdcc3 igdcc3,LOC107750478,LOC107755062,LOC107670768,LOC107700450,LOC106587238,LOC106562146 coding downstream 198944 2703505 ~ 2769648 (+)
G358908 NA non-coding upstream 35825 2434081 ~ 2434290 (+)
G358903 orc6 non-coding upstream 82939 2385298 ~ 2387176 (+)
G358902 NA non-coding upstream 103189 2366683 ~ 2366926 (+)
G358858 NA non-coding upstream 276692 2193163 ~ 2193423 (+)
G358834 NA non-coding upstream 466401 1997203 ~ 2003714 (+)
G358965 NA non-coding downstream 87503 2592064 ~ 2592271 (+)
G359293 NA non-coding downstream 189913 2694474 ~ 2696538 (+)
G359324 NA non-coding downstream 326722 2831283 ~ 2832473 (+)
G359335 NA non-coding downstream 359653 2864214 ~ 2903768 (+)
G359321 NA non-coding downstream 364263 2868824 ~ 2870688 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 83385 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 2018101 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 2118346 344062 ~ 351769 (+)
igdcc4 LOC108259659 other downstream 131728 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 281066 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 741149 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1209091 3713652 ~ 3767714 (+)
fto fto other downstream 2082046 4586607 ~ 4764886 (+)

Expression


Co-expression Network