G359335


Basic Information

Item Value
gene id G359335
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2864214 ~ 2903768 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425741
aacaacaacaacaacaaaaacaacaacaacaacaacaataaaaacagctaGATCATTAGCGTTGCTAGCCAACGCCAAACCGCAGCTAATTCCTTCACAAGCTAACTGACGTGACTAGCTCAATAAAACACCCCAAAACAGAGCACTAACTCCACACACAGCCGCACGGAATTACCCCAGAATAAtgactacacactctacacgaGTCTTTATCGCCGTTTTTCCGCACAACACACCGATTTCGCTTTAATTCCTGACAGCCAAGTCGCCTTAACGAAAACCGTCAAGAGCAGCGAAAAAGGTTGTCCTGTCCAGAATACGACACAGACTGACACCTGCGACACCCAATCAGAAAGCACGATTCTGGAACCTGGACGCTGCTGATTGGATAGTTATCAAGCTCAGTGATACATGATTGGACGCGCAATGATGGAGGCGGGATTTGTATTAGGACttggaataaatgtaataatgaacAAGGTATGTTCTCTAGGCAAGAAAAAAAGGTGctaaactgtacttttactTGTTGCTGGCGTGGTGCCTTTAAAAAGAGACTTCTTTTGGACCTTt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425741 True 573 lncRNA 0.43 2 2864214 2903768

Neighbor

gene id symbol gene type direction distance location
igdcc3 igdcc3,LOC107750478,LOC107755062,LOC107670768,LOC107700450,LOC106587238,LOC106562146 coding upstream 94566 2703505 ~ 2769648 (+)
nap1l4b nap1l4,LOC108259663,LOC108432411 coding upstream 236570 2613532 ~ 2627644 (+)
rfx7a rfx7 coding upstream 254040 2586847 ~ 2610174 (+)
calml4a calml4,calml4a,LOC103029589,LOC107740452,LOC107563455,LOC107553107 coding upstream 288805 2572870 ~ 2575409 (+)
cln6a cln6,cln6a,LOC108432377,LOC107563453,LOC107553103 coding upstream 291474 2564557 ~ 2572740 (+)
terb2 terb2 coding downstream 285616 3189384 ~ 3192531 (+)
abcc12 abcc12 coding downstream 313043 3216811 ~ 3237552 (+)
heatr3 heatr3 coding downstream 546531 3450299 ~ 3466887 (+)
tent4b papd5,LOC107750234 coding downstream 566196 3469964 ~ 3487524 (+)
adcy7 adcy7,LOC107551487,LOC107750233 coding downstream 589172 3492940 ~ 3567631 (+)
G359324 NA non-coding upstream 31741 2831283 ~ 2832473 (+)
G359293 NA non-coding upstream 167676 2694474 ~ 2696538 (+)
G358965 NA non-coding upstream 271943 2592064 ~ 2592271 (+)
G358908 NA non-coding upstream 429924 2434081 ~ 2434290 (+)
G358903 orc6 non-coding upstream 477038 2385298 ~ 2387176 (+)
G359458 NA non-coding downstream 155254 3059022 ~ 3060687 (+)
G359496 NA non-coding downstream 207128 3110896 ~ 3114166 (+)
LOC113540868 NA non-coding downstream 222333 3126101 ~ 3127054 (+)
G359547 NA non-coding downstream 289179 3192947 ~ 3262777 (+)
G359827 NA non-coding downstream 497966 3401734 ~ 3401975 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other upstream 40876 2785627 ~ 2823338 (+)
igdcc4 LOC108259659 other upstream 169927 2636289 ~ 2694287 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 477484 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 2412200 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 2512445 344062 ~ 351769 (+)
cebpa cebpa other downstream 341942 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 809884 3713652 ~ 3767714 (+)
fto fto other downstream 1682839 4586607 ~ 4764886 (+)
lgr4 lgr4,LOC107700365,LOC107740414,LOC107554901 other downstream 3427467 6331235 ~ 6404554 (+)
coro2ba coro2b,coro2ba,anp32a,LOC107755090,LOC107755092,LOC107663971,LOC107740437,LOC107700478,LOC107557695 other downstream 4042525 6946293 ~ 7005078 (+)

Expression


Co-expression Network