G358908


Basic Information

Item Value
gene id G358908
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2434081 ~ 2434290 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425227
ctggagactccttccataaatgtaaaatatacacatttctcttcacagaaaacttcaccacatcaacaattacacacgcttttaatctgtttttgtggagcatctgccgtacacatccctgtgaatcagctgttactatagaaacgataatgtattagaacgagtgtattaatataaatctgttatttgcagctgcactgctgctaTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425227 True 210 lncRNA 0.36 1 2434081 2434290

Neighbor

gene id symbol gene type direction distance location
vps35 vps35 coding upstream 2589 2392456 ~ 2431492 (+)
mylk3 mylk3,LOC106587297,LOC107690728 coding upstream 49593 2347821 ~ 2384488 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding upstream 135566 2287070 ~ 2298515 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding upstream 230483 2177978 ~ 2203598 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding upstream 259112 2020720 ~ 2174969 (+)
LOC117596027 NA coding downstream 343 2434633 ~ 2435076 (+)
slc7a10a slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615 coding downstream 35825 2470115 ~ 2504561 (+)
cln6a cln6,cln6a,LOC108432377,LOC107563453,LOC107553103 coding downstream 130267 2564557 ~ 2572740 (+)
calml4a calml4,calml4a,LOC103029589,LOC107740452,LOC107563455,LOC107553107 coding downstream 138580 2572870 ~ 2575409 (+)
rfx7a rfx7 coding downstream 152557 2586847 ~ 2610174 (+)
G358903 orc6 non-coding upstream 46905 2385298 ~ 2387176 (+)
G358902 NA non-coding upstream 67155 2366683 ~ 2366926 (+)
G358858 NA non-coding upstream 240658 2193163 ~ 2193423 (+)
G358834 NA non-coding upstream 430367 1997203 ~ 2003714 (+)
G358828 NA non-coding upstream 453487 1980220 ~ 1980594 (+)
G358965 NA non-coding downstream 157774 2592064 ~ 2592271 (+)
G359293 NA non-coding downstream 260184 2694474 ~ 2696538 (+)
G359324 NA non-coding downstream 396993 2831283 ~ 2832473 (+)
G359335 NA non-coding downstream 429924 2864214 ~ 2903768 (+)
G359321 NA non-coding downstream 434534 2868824 ~ 2870688 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 47351 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 1982067 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 2082312 344062 ~ 351769 (+)
igdcc4 LOC108259659 other downstream 201999 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 351337 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 811420 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1279362 3713652 ~ 3767714 (+)
fto fto other downstream 2152317 4586607 ~ 4764886 (+)

Expression


Co-expression Network