vps35 (vps35)


Basic Information

Item Value
gene id vps35
gene name vps35
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2392456 ~ 2431492 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299853.1
ctctcagccaatcagaggccGCCGCTGGCTGAGCGGATCTCCAGCAGTCACATGACCGACAGATTTTTTTTGAGCTGCAGAGTGATTGCTAACAGCTCAGTTATTAATCATCATGCCGACCACTCAGCAGTCGCCCCAGGACGAGCAGGAGAAGCTGCTGGACGAGGCGGTCCAGGCCGTCAAAGTGCAGTCCTTCCAAATGAAACGCTGCCTGgaCAAGAACAAGCTGATGGATGCACTGAAACACGCCTCTAACATGCTGGGGGAGCTCAGGACCTCCATGCTGTCTCCTAAAAGCTACTATGAACTCTacatGGCCATATCGGATGAGCTACACTACCTGGAGGTTTACCTGACTGACGAGTTCGCTAAAGGTCGTAAGGTGGCAGACCTGTATGAACTCGTACAGTACGCCGGGAACATCATCCCCAGactGTACTTGTTGATAACAGTGGGAGTGGTGTACGTGCGCTCGTTCCCTCAGTCACGCAAAGACATTTTGAAGGATCTGGTGGAGATGTGTCGTGGTGTTCAGCATCCTCTGAGAGGTCTGTTCCTGAGGAACTACCTGCTGCAGTGCACACGTAACATCCTGCCTGACGACGGAGAACAGGCCGAGGAGGAGATGACCGGCGACATCAACGACTCGATCGACTTTGTCCTGCTGAACTTTGCTGAGATGAATAAGCTGTGGGTGCGAATGCAGCACCAGGGCCACAGTCGTGACCGCGAGAAGCGGGAGAAGGAGAGGCAGGAGCTGCGCATCCTCGTCGGCACCAACCTCGTCCGACTCAGCCAGCTCGAGGGCGTCAACGTCGAGAAATACAAACAGATTGTTCTGCCAGGAGTCTTGGAGCAGGTGGTGAACTGCAGAGATTCTCTAGCGCAGGAGTACCTCATGGAGTGTATTATACAGGTTTTCCCAGACGAGTTCCACCTCCAGACCCTGAACCCGTTTCTCAGAGCGTGTGCTGAGCTCCACCAGCACGTCAATGTCAAGAACATCATCATAGCTCTTATTgacagGTTGGCTCTGTTTGCTCACAGAGAAGATGGACCTGGAATCCCTGCCGAAATCAAACTCTTTGATATTTTCTCCCAGCAAGTGGCCACAGTCATCCAGTCTCGTCAGGACATGCCGTCGGAGGACGTTGTGTCTCTGCAGGTGTCCCTCATTAACTTGGCTATGAAATGCTACCCTGAGCGCGTTGACTACGTAGACAAGGTTCTCGAGAGCACCGTGGAGATCTTCAACAAACTCAACCTGGAACACATTGCGACGAGCAGCGCCGTATCGAAGGAGCTCACCAGGCTGCTGAAGATTCCCGTGGACACCTACAACAACATCCTGACGGTCCTTCAGCTCAAACACTTCCCGCTGCTCTTCGAGTACTTCGATTACGAGTCACGCAAGAGCATGAGCTGCTACGTGCTCAGCAACACGCTGGACTACAACACCACCATCGTGGCCCAGGAGCAGGTGGATGCGATCCTGAACCTGGTGTCCACACTGATCCAGGACCAGCCAGATCAGCCTGCAGAGGATCCCGACCCAGAGGACTTTGCAGAGGAGCAGAGTTTAGTGGGCCGCTTCATCCACCTGCTGCATTCCGACGATCCGGACCAACAGTACCTGATTTTAAACACAGCCAGGAAGCACTTCGGAGCCGGGGGTAATCAGAGGATCCGCTACACGCTGCCTCCGCTGGTGTTCGCCGCCTATCAGCTGGCCTTCCGCTACAAAGACAACGCCTCCTCGGACGATAAGTGGGAGAAGAAGTGCCAGAAGATCTTCTCCTTCGCCCATCAGACCATCAGCGCGCTGATAAAGGCCGAGCTGGCAGAGCTGCCGCTGCGTCTCTTCCTGCAGGGGGCGCTCGCCGCCGGAGAGATCGGCTTCGAGAACCATGAGACCGTCGCCTACGAGTTCATGTCTCAGGctctctctctgtatgagGATGAGATCAGTGACTCTAAGGCCCAGCTTGCAGCCATCACGCTGATCATCGGCACGTTCGAGCGCATGCGCTGTTTCAGCGAGGAGAACCACGAGCCTCTGAGAACCCAGTGCGCTCTCGCTGCATCCAAACTGCTGAAGAAACCCGACCAGTGCCGCGCCGTCAGCATCTGCGCTCACCTCTTCTGGTCCGGACGCAACACCGACAAGAATGGAGATGAGatccGTGATGGGAAGCGTGTGATGGAGTGCTTGAAGAAGGCCCTGAAGATCGCCAACCAGTGCATGGACCCGTCTCTGCAAGTGCAGCTCTTCATCGAGATCCTCAACCGTTACGTGTGTTTCTACGAGCGAGAGAACGATGCGGTGACCGTTCAGGTCCTGAACCAGTTGATCCAGAAGATCCGTGAGGACCTGCCCAACCTGGAGGCGAGCGAGGAGACGGAGCAGATCAACAAACACTTTCACAACACACTGGAGCACCTGCGCCTGCAGAGGGAGTCGCCCGAGTCAGAGGGCCCCGCCTACGAGGGGCTGGTGCTgtagaggccacgccccttcaccCAACATGCATACCTACATCTGTGCACACACCCCTatagacatacagagagagagagtgcgagtGTGCGAGTGTGCGAGTGAGTGTTCACACCTGAACATCTGCTCCAGTTAATAGAAAAACCAACCCACACACAGCCGCCATCTTTGTGTTACTGttcttcattctttctctctctctttctccttttctctctcttcttttgttcttttttctctgtctataaataaatgtacatttttttccttttatttcttgatccttttt

Function

symbol description
vps35 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

NR:

description
vacuolar protein sorting-associated protein 35-like isoform X2

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0030904 retromer complex cellular_component

KEGG:

id description
K18468 VPS35; vacuolar protein sorting-associated protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299853.1 True 2786 mRNA 0.54 17 2392456 2431492

Neighbor

gene id symbol gene type direction distance location
mylk3 mylk3,LOC106587297,LOC107690728 coding upstream 7968 2347821 ~ 2384488 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding upstream 93941 2287070 ~ 2298515 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding upstream 188858 2177978 ~ 2203598 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding upstream 217487 2020720 ~ 2174969 (+)
LOC117596061 NA coding upstream 487865 1890574 ~ 1904591 (+)
LOC117596027 NA coding downstream 3141 2434633 ~ 2435076 (+)
slc7a10a slc7a10a,LOC108259476,LOC108432406,LOC107722389,LOC107696718,LOC107551479,LOC107741033,LOC107554615 coding downstream 38623 2470115 ~ 2504561 (+)
cln6a cln6,cln6a,LOC108432377,LOC107563453,LOC107553103 coding downstream 133065 2564557 ~ 2572740 (+)
calml4a calml4,calml4a,LOC103029589,LOC107740452,LOC107563455,LOC107553107 coding downstream 141378 2572870 ~ 2575409 (+)
rfx7a rfx7 coding downstream 155355 2586847 ~ 2610174 (+)
G358903 orc6 non-coding upstream 5280 2385298 ~ 2387176 (+)
G358902 NA non-coding upstream 25530 2366683 ~ 2366926 (+)
G358858 NA non-coding upstream 199033 2193163 ~ 2193423 (+)
G358834 NA non-coding upstream 388742 1997203 ~ 2003714 (+)
G358828 NA non-coding upstream 411862 1980220 ~ 1980594 (+)
G358908 NA non-coding downstream 2589 2434081 ~ 2434290 (+)
G358965 NA non-coding downstream 160572 2592064 ~ 2592271 (+)
G359293 NA non-coding downstream 262982 2694474 ~ 2696538 (+)
G359324 NA non-coding downstream 399791 2831283 ~ 2832473 (+)
G359335 NA non-coding downstream 432722 2864214 ~ 2903768 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 5726 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 1940442 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 2040687 344062 ~ 351769 (+)
igdcc4 LOC108259659 other downstream 204797 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 354135 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 814218 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1282160 3713652 ~ 3767714 (+)
fto fto other downstream 2155115 4586607 ~ 4764886 (+)

Expression


Co-expression Network