heatr3 (heatr3)


Basic Information

Item Value
gene id heatr3
gene name heatr3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 3450299 ~ 3466887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299629.1
TTTGCGGTAGCGGCGCCCAGGTTCCACATGgcagtgtgtgttcctgtgctgTAGGGTCTGTCGGTTCAGttgggtttattttatttatttatttaaaacgtAGCGCGATGGGAAAGACGAAGAACGCGAGGTTTAAGCGCGCGCAGTTTTGTCCGGATGGACTTCCGGTAAAAGCTGTGAAACGCGCCGCTGAAGATGAGGGTGAAGAAGAAGAGGTTGAGTCTCCGCATGCAGAATTACTGGAAAAGtTGCAGAGTCCGAGTGCAGATATACGTGAGTACGCGTGTGCGAGTATTTCCCGGGTGGTTCAGCAGAGTCAGACGATCCCGGGCTTCCTGCACAGAGACGCAGTGAGGAGGTTAGCACCGCTTCTTCTGGACAGCAGCCTGGCGGTCAGAGAGACGGCCACCGGAGCGCTCAGgaacctgagtgtgtgtggtggagcGGAGGTGTGTGAGGACATGGTGAGGCAGGACGTCCTCACTCCTCTCACCGCTCTGCTGAACGAGTGCTGCATGGGGGTGCAGGTGAGCTCCAGTCCCGGGAAGAAGGACCAGAAACCGACAGTCGAGGATGTAGCTAATGAAGCTGTGAATTTACTCTGGAATCTCTGtgagagcAGCAGTACAGCAGTGTCGGTGTTTAATAGAGCGAGACTTCTGGATGTTCTGTTGCCCTGCATTGAGAAACATCCACACAACATCCAGCTCGCTTTATCAGCAgcacaCTGCTTGCACACAGTGACCGAGGATAACTCCGACCTGACAGGAAGTGTGAACGGCGCCGTTTTGGCAGCTTTAGAGAACGTGTTGCTCTCCACACACTCCAGCATGGAACATGTTCTCTTCCGCACTCTGGCTGcagGAACCGTGTGGAACCTGAAGAgctgtctctcctcctcccgTCAGGCCGAGGCTCTCTCTGCCGTGGTGAAGACTCTGGCACACTGTCTCAGTCTGGACGCCGGAGCGCTGATCCCAGACCTGTGGCAGAGAGAGTCGAGTCGCCTGGCCAGCGGCGGCACGGCTGATCCGGAGTCAGCCGGGGTGGAGGAGCAGCAGGCCGGGGCCAGCGTGCAGGAAGAAGAGGAGATGGACGAGGGAGAGATAAAGATGAATAGAGGAAAGAGGAACGggaaaaagatggaaaaagattTTGCTGCTTTTCTGCCTagggACAAACCGGAGCTGAGAGAAGCCGTAGCACTACTGACAGCACAGCAAACATCCCTGGAGATCGTTGTCAACATGTGTTGCTCAGATGaacccTCCGATGACGAGTGGGAGGAGATGTCGAGCAGTGACGAGAGTGAGATATGTGCCGACGGTGTGGCAGATGGGAACTCCagcctcttctctcctctctgcctttctgcagagttacacacaacactgctgaaTTACAGCATACCACAgcagGTCCTGAAGAAAGCGGAGTTTCCCAGCCACGCTGCTCTGGAGGTTTGCGGCAGGAATCCAGCGTGGAAGTGCCTCGTTAAGAAAATGCAGCGGGTGCAGTGTCGGGCTCTGACGTGTCTCCATAACATGCTGGCTGTGATGGACGTGGAGTGTTTGGGTGGAGCTGCAGGACTGCAGGCCGTCGCTCAGCACCTCTCGTCTCTGATCTTTAGCTcagcagATGTTTTGAAAGATGAGGAGTTCTTGGAGGCCGTAACCAGTGCCATGCGCTCGCTGCTCCAAATAATGGCCTCCAAAAATATCCCTcagtgtatgaGCCCTCAGCAGTTGATGAGCGTGTGTGAAGCAGCAATGCGGTGTGATGTGGTGAGTGTGAGGGTGAACGCTCTGGCCATTCTGGGCATCACAGGAAGCACGCTGGCTAAAGACAAGGGATCTGCTGAGACACTGCAGCTGATAGGAAACGCACTGCTGAATGTAGCGTCTAAAGACGTGAACCTGGTGGCGTGTGGAGAGGCGCTGGACGCTCTGTTCGATGTTTTTGCAGACGGCGAGGAGGCAGAGCGAGCGGCACAAAACCTCAACCTGCTCGCAGCTCTGAAATCCCTGCAGCCTGCGTTCACTGCCaagATCCGGAAGGAAGGCCGAGGGAAGTACAGCCCGGATCAGCTGTGCGTCCTGGACAACGTCAAGGTTAACCTGCGCAGGTTCATCGGCTACCTGGAGTCACTGCGCAAGAAATAGGACACGGAAGTCAGACACGACAGACTTGACTGAACATGAATGTGAGGTTTTGGAGTTTAAAGCTCCAATCAGGAATCTGTGGAACTGGCAGgccagtttttctttttttttgtgtgtgactgCAATTACAGAGAACAACAACACGTACTCTATATTCTAGATTTGAGTGGCAGTTAATTTAGGaatgagaattaaaaaatatgattacAAGAATTTAGTGTATTAAATAATACCCTAGTCCAAGAGATAAAATATTACTGAGGGTGGTCTTTAGCAGTATCAGTATAATTACCTATTTACttttacaatataaatattttcaatattatatCCTTTATATTGATCACTTGGCTAGATTAATTATCATTAAAGAAATGAATGGAGTTTGACAAAGAACAAAATTcaacaaattcaaattcatttgcTTTATGTCCAAAGAAAATAACTCTATCAGTTGTTATTatcagttatttttaattattacagtatataattaCTCGAGTGaaatttctttcttcatttttaatatcatgCCTCTGGGTTCACAGATCTGATCATTTGCTGCCATTTAGTTTTACAGCCTAATATGGTGTGTAACtagaaaaatgaaattacattttatttctggaaatatgtcaagtgcaaacatgtgttGAAGTTCTGACGCTGGTTTGGCCGTTCCTGATTGGGTCTTGAAGGACAAACCCAAATATTCGTCTGAAAAAAAGTAGCTTTTCTAGCAGTAAATATTACACGACATGATGGGGCATTGATTTTGCCTTGAATAGAGATGTTTGAGTACTTGAAAGTTGATAAAGTCACAAGAGTGGGAATTAAAATACCAGATTTAACGGGAATATCGGAGGATTACGTGTAAGACATTGTGGATCAGAGCGAACAGTAGCCCGTTCTGTTATGCAGTGTGTAAAAAGAGCCTTATGAGTGGTTATGTTTGAGGTTATGGAAGCGTTAACGGTGATTATTTGCGAAAACATAAGCTGAAAGATATCCTGTGTGGTTATATGTAAGCAAGCATCTAAAAGAGTAAGGTAGGACCTTTATATTTTCTTGTCTCATTCTCTGTTTCAGTGTTTAACGGTTTTTGCAAAATATATCAAATGTCCTTTCCTAACCTTCTTGTTGTGTGCATGCTTGGTGTCTGGTGTTGCTTCTTTACTTTTGGAACGACGGAAGCTTGCGTGCATCAGCGACTGGAAATCTGTCTCACCCAAAATCCTTTCCTTAAATACATGACCACATCTTTGTGTACTTGCTTCAACACGTGACATCTTATTTAtactacagcgctgttgaattctctcaggtgttgattcattttctataacagcagtttatattaatgtacacattagcgtttctatagtaacagctcattcacaaccactaataataaacagattcataaaaaaaaaaccatatgATTCCGTTTTCTGTAAAGAATCGTTTATttattggaaggagtctccagtgtcagtgaaacTTTTGGTTTTACTCCacagcaaagtcttcaggatggaggaagTGATGtaacaaactgcttttttttgtctaattaacttcaagagaaattGAACAAACGATTATTTATATCTGCTGTAACGTATGTGACTTTTTTTCAAGAACAatccacgacattaaatgtaacagtaaATGGATAAATTGAATGACATGATGTTAATCaatgttgtttaaataaaacttataGTTGTTGCCAGATTGCTGTGCTAATCAAATAAACcccttcagggtggtaactaATTCCATTTCACGCTGGAGCCACGTCGCATTTCATCACCCcacagctgattattttcctgtaacagcacaacatggagtgcTTTAAGATTTACTTAATATCCTCATTATAGGAAAGATACTAAAAGATAGTAATATAATTTCACTTTGACCTTCAATACAATAGTAAGGATAATCCATATTCATAatgttgtgtgatttttttttttttttttaagatttcatAGCTGAACCATTCAGCATTCATTGTTTGAAGTAAATATATGAAGATTTGTGaatatatttacagaaatgATTCTGTTACTTCATGTTCACGGCATTAGGCTTGTAGCTCCTGGAcagaactaaagaagcaaacatcagacactaaatattacagaaatacGTTTCTCTTCCTGCTCTTGTGTAGAATTGATTACACAGATATTATCTCTGAtaaggtgtttaaaaaaagtgtgaaattttcttttaaatatgttgATTGGTTATTCTCCCAAGACCTTCTTtggattattttttcattttataaatggACGTAAGATAGAGCTCTGACTGAAAAGATTTGGTGTGAATTTTTTGTTTGATGCTTTACATGATTAAAGCATCACATTTTTGATGATGAA

Function

symbol description
heatr3 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein import into nucleus and ribosomal large subunit biogenesis. Orthologous to human HEATR3 (HEAT repeat containing 3).

NR:

description
HEAT repeat-containing protein 3-like

GO: NA

KEGG:

id description
K24812 HEATR3; HEAT repeat-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299629.1 True 4561 mRNA 0.44 16 3450299 3466887

Neighbor

gene id symbol gene type direction distance location
abcc12 abcc12 coding upstream 212747 3216811 ~ 3237552 (+)
terb2 terb2 coding upstream 257768 3189384 ~ 3192531 (+)
igdcc3 igdcc3,LOC107750478,LOC107755062,LOC107670768,LOC107700450,LOC106587238,LOC106562146 coding upstream 680651 2703505 ~ 2769648 (+)
nap1l4b nap1l4,LOC108259663,LOC108432411 coding upstream 822655 2613532 ~ 2627644 (+)
rfx7a rfx7 coding upstream 840125 2586847 ~ 2610174 (+)
tent4b papd5,LOC107750234 coding downstream 3077 3469964 ~ 3487524 (+)
adcy7 adcy7,LOC107551487,LOC107750233 coding downstream 26053 3492940 ~ 3567631 (+)
nkd1 nkd1 coding downstream 183070 3649957 ~ 3689108 (+)
nod2 nod2 coding downstream 235299 3702186 ~ 3711556 (+)
irx5a irx5 coding downstream 1590162 5057049 ~ 5060655 (+)
G359827 NA non-coding upstream 48324 3401734 ~ 3401975 (+)
G359547 NA non-coding upstream 187522 3192947 ~ 3262777 (+)
LOC113540868 NA non-coding upstream 323245 3126101 ~ 3127054 (+)
G359496 NA non-coding upstream 336133 3110896 ~ 3114166 (+)
G359458 NA non-coding upstream 389612 3059022 ~ 3060687 (+)
G359840 NA non-coding downstream 50160 3517047 ~ 3568709 (+)
G359891 NA non-coding downstream 199293 3666180 ~ 3724679 (+)
G359894 NA non-coding downstream 292076 3758963 ~ 3769660 (+)
G360052 NA non-coding downstream 366336 3833223 ~ 3834379 (+)
G360070 NA non-coding downstream 425728 3892615 ~ 3893039 (+)
cebpa cebpa other upstream 149616 3245710 ~ 3300683 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other upstream 626961 2785627 ~ 2823338 (+)
igdcc4 LOC108259659 other upstream 756012 2636289 ~ 2694287 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 1063569 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 2998285 426873 ~ 452014 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 246765 3713652 ~ 3767714 (+)
fto fto other downstream 1119720 4586607 ~ 4764886 (+)
lgr4 lgr4,LOC107700365,LOC107740414,LOC107554901 other downstream 2864348 6331235 ~ 6404554 (+)
coro2ba coro2b,coro2ba,anp32a,LOC107755090,LOC107755092,LOC107663971,LOC107740437,LOC107700478,LOC107557695 other downstream 3479406 6946293 ~ 7005078 (+)
znf536 znf536,LOC107556245,LOC107696660,LOC107691894 other downstream 4498314 7965201 ~ 8140621 (+)

Expression


Co-expression Network