G359827


Basic Information

Item Value
gene id G359827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 3401734 ~ 3401975 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU426295
AAGGATGTTTATGACGAACTAAGCAGATCTGCTCAAAGATACACTGAGTGACTGAAGGTATTTTTAACTCAATGATAAGCTTTATAAGCGTTATCTTCTGAGAAAGTCTAAAAAGACCGGTTGGTAATGAGTAGTAAAAATGATTTGTGTTATAATTTCCTAGGGTATGTAGGTAGAAAATAACATATACACTGAATATAGTAAACTTCCTGAAGTTAAGATGGCTTCCTGTGACATTAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU426295 True 242 lncRNA 0.33 1 3401734 3401975

Neighbor

gene id symbol gene type direction distance location
abcc12 abcc12 coding upstream 164182 3216811 ~ 3237552 (+)
terb2 terb2 coding upstream 209203 3189384 ~ 3192531 (+)
igdcc3 igdcc3,LOC107750478,LOC107755062,LOC107670768,LOC107700450,LOC106587238,LOC106562146 coding upstream 632086 2703505 ~ 2769648 (+)
nap1l4b nap1l4,LOC108259663,LOC108432411 coding upstream 774090 2613532 ~ 2627644 (+)
rfx7a rfx7 coding upstream 791560 2586847 ~ 2610174 (+)
heatr3 heatr3 coding downstream 48324 3450299 ~ 3466887 (+)
tent4b papd5,LOC107750234 coding downstream 67989 3469964 ~ 3487524 (+)
adcy7 adcy7,LOC107551487,LOC107750233 coding downstream 90965 3492940 ~ 3567631 (+)
nkd1 nkd1 coding downstream 247982 3649957 ~ 3689108 (+)
nod2 nod2 coding downstream 300211 3702186 ~ 3711556 (+)
G359547 NA non-coding upstream 138957 3192947 ~ 3262777 (+)
LOC113540868 NA non-coding upstream 274680 3126101 ~ 3127054 (+)
G359496 NA non-coding upstream 287568 3110896 ~ 3114166 (+)
G359458 NA non-coding upstream 341047 3059022 ~ 3060687 (+)
G359335 NA non-coding upstream 497966 2864214 ~ 2903768 (+)
G359840 NA non-coding downstream 115072 3517047 ~ 3568709 (+)
G359891 NA non-coding downstream 264205 3666180 ~ 3724679 (+)
G359894 NA non-coding downstream 356988 3758963 ~ 3769660 (+)
G360052 NA non-coding downstream 431248 3833223 ~ 3834379 (+)
G360070 NA non-coding downstream 490640 3892615 ~ 3893039 (+)
cebpa cebpa other upstream 101051 3245710 ~ 3300683 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other upstream 578396 2785627 ~ 2823338 (+)
igdcc4 LOC108259659 other upstream 707447 2636289 ~ 2694287 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other upstream 1015004 2321124 ~ 2386730 (+)
cmtm4 cmtm4 other upstream 2949720 426873 ~ 452014 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 311677 3713652 ~ 3767714 (+)
fto fto other downstream 1184632 4586607 ~ 4764886 (+)
lgr4 lgr4,LOC107700365,LOC107740414,LOC107554901 other downstream 2929260 6331235 ~ 6404554 (+)
coro2ba coro2b,coro2ba,anp32a,LOC107755090,LOC107755092,LOC107663971,LOC107740437,LOC107700478,LOC107557695 other downstream 3544318 6946293 ~ 7005078 (+)
znf536 znf536,LOC107556245,LOC107696660,LOC107691894 other downstream 4563226 7965201 ~ 8140621 (+)

Expression


Co-expression Network