G358726


Basic Information

Item Value
gene id G358726
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 1715546 ~ 1715887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU425010
gtttgctgttataatgagctccactcttctgcgaagtctttccactagatgttggagcgtggctgtggggatttgtgttcattcagctacaagagcattagtgagatcaggcgctgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccgtgtcttcatggagctcgctttgtgcacaggggcattgtcatgctggaacaggtttgagcctcttagttccagtgaagggaaactgtaatgctacagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425010 True 342 lncRNA 0.51 1 1715546 1715887

Neighbor

gene id symbol gene type direction distance location
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding upstream 282228 1303881 ~ 1433318 (+)
cdh11 cdh11 coding upstream 720315 953205 ~ 995231 (+)
tk2 tk2 coding upstream 1238574 466540 ~ 476972 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding upstream 1294678 405979 ~ 420868 (+)
nae1 nae1,LOC107562208 coding upstream 1339300 362885 ~ 376246 (+)
LOC117596061 NA coding downstream 174687 1890574 ~ 1904591 (+)
itfg1 itfg1,LOC103369364,LOC107395746 coding downstream 304833 2020720 ~ 2174969 (+)
LOC113540805 neto2,LOC107757778,LOC107591032,LOC107660668,LOC107598688,LOC107723137 coding downstream 462091 2177978 ~ 2203598 (+)
dnaja2a dnaja2,LOC107723138,LOC107757777 coding downstream 571183 2287070 ~ 2298515 (+)
mylk3 mylk3,LOC106587297,LOC107690728 coding downstream 631934 2347821 ~ 2384488 (+)
G358720 NA non-coding upstream 107635 1607639 ~ 1607911 (+)
G358713 NA non-coding upstream 265081 1450155 ~ 1450465 (+)
G358587 NA non-coding upstream 475408 1239914 ~ 1240138 (+)
G358577 NA non-coding upstream 575188 1140007 ~ 1140358 (+)
G358519 NA non-coding upstream 743200 971580 ~ 972346 (+)
G358796 NA non-coding downstream 209921 1925808 ~ 1928313 (+)
G358828 NA non-coding downstream 264333 1980220 ~ 1980594 (+)
G358834 NA non-coding downstream 281316 1997203 ~ 2003714 (+)
G358858 NA non-coding downstream 477276 2193163 ~ 2193423 (+)
G358902 NA non-coding downstream 650796 2366683 ~ 2366926 (+)
cmtm4 cmtm4 other upstream 1263532 426873 ~ 452014 (+)
ccne1 ccne1 other upstream 1363777 344062 ~ 351769 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 605237 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 920402 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 1069740 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 1529823 3245710 ~ 3300683 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other downstream 1997765 3713652 ~ 3767714 (+)

Expression


Co-expression Network