plekhf1 (plekhf1)


Basic Information

Item Value
gene id plekhf1
gene name plekhf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 320536 ~ 323330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911574.2
GATTCTGAGAAGACAGAGAAATCCCAGCTGAGCAGGAAAGACGAGTTTACCGCACATATATAGAGCACCGAGGCAACTTCCtcttcacacactcttcacacactcttcacacacatacGTGCACAATCTATCGGATCTATCCAGAGGaaactttaaacacacagactgatCACTCTCTGAGAAAACTCTTCAACAATCAGACAGCAGTGATGGTGGACAACCTGCAGTTCGGGATGGAGAACCGTGAGCGTATCCTGGCCGTGGAGAACTCCTTCATTCCGGGCGGGAAGCCTCTCCTCGCTCCGGGTCGCGTCCTGATCGGAGAAGGTCGTCTGCTGAAGCTGTGCAGACGCAAACCGCAGCCCAAAGTCTTCTTCCTGTTTAACGACATCCTGGTGTACGGCAGCATCGTGGTCCCGGGCCGCTGGAACAACCACCAGCAGATCCTGCATCTGGAGGAACTGGAGCAGGAGAACCTGAAGGACGGAGTGGGAATGAGTAACCAGTGGCTCCTCCGGACGCCACGCAAGTCCTTCCACATCTCCGCGGCGTCGCTGGAGGAGAAGCAGGCGTGGATGGAGCACATCGAGTGCTGCCGGATGGAGCGGCTGAAGCAGCTCGGGTTGCCCGCCGTGATGAAGCCACTCGCCGCCATCTGGATCCCCGACGCCGCCTCGGCCGTGTGCATGCGCTGCTCAGAGCCCTTTAACGTCACCCAGCGCAGACACCACTGCAGACACTGCGGCTTCGTGGTGTGTAACTCCTGCTCGAAGACTCGCGCCAtcctcacacacatctcacccAAACCGGTCCGGGTGTGTCGCCGGTGTAAGGTCTCTCTGTGCGAGAAGAAAGTCAGCAATGAAGCTTTGAGGTGGAGAGACACGATCGAGGAGATGCCTGAATACGAAGAATCCAGTGATGAGGACCAGGAggagaaccacacacacacacacaccgcatgGTTCAACGCTTACCGAGAAGCCGAGCCTCTGTACTGCTACTTTAACCCCAAACACTCCAAACCTCCACAGCTGTAGTGTGAACTTCTGCAGAACATCTAAAGAACCTTCAAACAGGGTTAAAAAGACAATGTGAACAGTTGTGGTTCTCCACTAAATacgagaacacacacatacacacacacacaccatcatcataatcatgatTATCAATTCTTCCTAACACTATTTCCATCACACTTCATCTTCATCCACAGCACTGACGATGTTCTGCTGATGAACTTGTCTAATGAAAGGATCAGCATGATGTATGATTCTACACTGACGTGAACAACACTGAGAGCGTACGACTACACAAAATCAACatcaaacatttaaattatttatttaagattacTGTAATATCAGTTTCTGTGACAGTGAACAGTTTTATTGTGTAAGAATTCTGACTGCTGCTGAGTTTTTTCAATCTTGCTGTTATAAACAATGATGTTTTtataattactaataataataatgataataataataataatttttgtgaAATTAATAACTTTATCACATTCTGTAccctcaggaaaaaaaaggtatttcattagcattagcattataaTGTAGTGCTGTTATTTAAGGCTACATAGTAGAGCGCAGTCTTATGCTCTCTGACGTCACTACTGCTGTAACGAGTCGCCCTCTAGTGGACATGTGAGGTGTGacactgtatataaatgtcTGTATGTGGATTATATGTTTGTATTTCAAAATTTAATATTAACTTTATAATTCAAGcactaataaatattattataaaagcatgcagtggtattattattattattattattattattattattattattaatgttagaGGAGTAGCTCTAAAGGGCATTGATGTGCAAAATAAAGCAGCTttatgtaacacacactgaaagcaAAGTTCACAGTTTTCCCCCAGTGGTTTATTACATtctttatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacagagagccACTTCAGCTCTAGTACAGAACAGAAACAgggagaaagaatgaaagaataaaaatctgACATGTGACTCTCTGACCTCagcatttacaataaaacaaaacagtgagaTCTGAAATAACAGCCAATTTattaactttataaaaaaaa

Function

symbol description
plekhf1 Predicted to enable phosphatidylinositol binding activity. Is expressed in EVL and periderm. Orthologous to human PLEKHF1 (pleckstrin homology and FYVE domain containing 1).

NR:

description
PREDICTED: pleckstrin homology domain-containing family F member 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911574.2 True 2130 mRNA 0.44 2 320536 323330

Neighbor

gene id symbol gene type direction distance location
LOC113525130 NA coding upstream 13773 299673 ~ 306763 (+)
si:ch211-260e23.9 LOC108259284 coding downstream 7657 330987 ~ 338641 (+)
nae1 nae1,LOC107562208 coding downstream 39555 362885 ~ 376246 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding downstream 82649 405979 ~ 420868 (+)
tk2 tk2 coding downstream 143210 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 629875 953205 ~ 995231 (+)
G358312 NA non-coding upstream 34009 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 45913 273454 ~ 274623 (+)
G358305 NA non-coding upstream 140386 179938 ~ 180150 (+)
G358304 NA non-coding upstream 141222 179026 ~ 179314 (+)
G358289 NA non-coding upstream 182205 135381 ~ 138331 (+)
G358331 NA non-coding downstream 15493 338823 ~ 436472 (+)
G358344 NA non-coding downstream 55900 379230 ~ 424643 (+)
G358338 NA non-coding downstream 68003 391333 ~ 394621 (+)
LOC117596071 NA non-coding downstream 76017 399347 ~ 400856 (+)
G358359 NA non-coding downstream 162405 485735 ~ 487322 (+)
ccne1 ccne1 other downstream 20732 344062 ~ 351769 (+)
cmtm4 cmtm4 other downstream 103543 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1997794 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2312959 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2462297 2785627 ~ 2823338 (+)

Expression


Co-expression Network