nae1 (nae1,LOC107562208)


Basic Information

Item Value
gene id nae1
gene name nae1,LOC107562208
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 362885 ~ 376246 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299454.1
GTGTGCAGTTAAAATGCTGCAGAGTGATTATTTTTACTAAAAGCTTTAATCGGTGACGGTGTAAAGTTTGTCATTATGCTTGTAGTCTGTAGATGTAGATGGCTGAATTTACGTCAGGGAGTAGGAAGCTGCTGTTCCTCCCCCTGTGTAGTGCAGTATGTAGGCGGCAGTGagcggtttgggacgcagccgcAGCGCTTcactgagacacagacagagagagagagagagagagagagagctgctggTGCAGGAGCTGAGCCGGCATGGCCGAACACAAACCCAATAAAGAGCAAAGATACGACCGACAGCTCAGGTTATGGGGAGATCATGGTCAGGATGCTCTTGAAAGTGCACATGTGTgtctgataacacacacacacaggcTCTGCAGCTTCTTTCTCAGCAGCGACAGTATCGGCAAGagcCGAGCTCAGGCAGCGACTGAGTTACTGCAGGAACTGAACAGTGATGTTTCAGGAAACTTTGTGGAGGAGGACGCTGATAAGCTGCTGGAAAACGATCCGGAATTTTTTAACAGATTCAGTTTGGTCATCAGTGTTCAACTTCCAGAAAGtgtgtgtttgaggttgGCGAGTGTGTTATGGAAGGCCAGCGTGCCGTTCCTGGTCTGCAGGACGTATGGACTCGTTGGGTACATGAGACTCGCCGTGAAGGAACACACAGTGGTGGAGTCTCACCCCGACAGCGCTCTGGAGGATCTCAGACTGGACGCTCCGTTCTCCGAGCTGAGAAATCACATCAAGTCCTACGACCTGGACTCCATGGACAAGAAGGATCACAGTCACACGCCGTGGATCATCATCATCGCTAAATATCTGGAGAAGTGGTACAGTGAGCATGACTTTCAGTTGCCAAAAAATTACAAGGAGAAGGAGGCGTTCAGACAGCTGATCAGAGACGGGATTCGTACGAATGAAAACAGTGCtccggaggaggaggagaactTTGATGAAGCCATTAAGAACGTCAACACGGCTTTAAATCCCactaagatctgCAGCAGTGTGGAGGAGATCTTCAGGGCTGAGCAGTGTGAGAACATCACCTCACAGACTCCGGCGTTTTGGGTGATGGCTCGAGGTGTGAGGGATTTTGTGCAGAACGAGGGGAACGGGAAACTCCCCCTGCGCGGCACCATCCCGGATATGATCTCTGACTCCGATAAATTCATCAACCTGCaaaatgtttacagGGAGAAGGCAATGCAGGACGCTGCTGTTGTGGCCAAACACATCGAGTCTCATCTTCAGGCTGTTGGgaagCCAGCAGAGAGCGTCTCCGAGCAGGACATCAAACTGTTCTGTAAGAGTGCGGCGTTCCTGCGGGTGATCCACTGCAGATCTCTCTCTGAAGAATACAGTGTGGAAACTATTAACAAGGACGAGATCactTCCTGTATGGATAATCCAGACAGTGAGATGGTTCTCTATCTCATGCTGCGTTCTGTGGATCGTTTCTACCAGCAGCACTCCAGATACCCAGgtgtgtatAATTACCAGGTGGAGGAGGACATCAGCAGgttgaaggtgtgtgtgaacagtcTGCTGCAGGAGTACTCACTCAGCGTCAACGTTAAAGACGACTACATTCACGAGTTttgcCGTTACGGAGCTGCAGAGCCACACACAGTCGCAGCATTACTGGGAGGAGCTGCAGCTCAGGAAGCCATCAAACTCATCACACACCAGTTTGTGCCATTTAACAACACGTTCATCTACAACGCCATGGCCCAGACATCAGCCACCTTCCAGCTCTGAGACTCTGCAAACCCGctcgtgtgcgtgtgtgtgcgtgtgtgtgcgcgtgtgtgtgtgtgtgtgttttactcagCTCGATTTACTCATTACTGTGTTCTTAAAGTCACTGTTCATCAATAAACACTGCATCAGTAATAAATACTGTCTCTGATAAAACACCA

Function

symbol description
nae1 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm. Orthologous to human NAE1 (NEDD8 activating enzyme E1 subunit 1).

NR:

description
PREDICTED: NEDD8-activating enzyme E1 regulatory subunit

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K04532 NAE1, APPBP1; NEDD8-activating enzyme E1 regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299454.1 True 1942 mRNA 0.50 19 362885 376246

Neighbor

gene id symbol gene type direction distance location
si:ch211-260e23.9 LOC108259284 coding upstream 24244 330987 ~ 338641 (+)
plekhf1 plekhf1 coding upstream 39555 320536 ~ 323330 (+)
LOC113525130 NA coding upstream 56122 299673 ~ 306763 (+)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding downstream 29733 405979 ~ 420868 (+)
tk2 tk2 coding downstream 90294 466540 ~ 476972 (+)
cdh11 cdh11 coding downstream 576959 953205 ~ 995231 (+)
cdh8 cdh8,LOC108259133,LOC107751507,LOC107591036,LOC107708568,LOC107655537,LOC107561036,LOC107660669 coding downstream 927635 1303881 ~ 1433318 (+)
LOC117596061 NA coding downstream 1514328 1890574 ~ 1904591 (+)
G358312 NA non-coding upstream 76358 284243 ~ 286527 (+)
LOC113525132 NA non-coding upstream 88262 273454 ~ 274623 (+)
G358305 NA non-coding upstream 182735 179938 ~ 180150 (+)
G358304 NA non-coding upstream 183571 179026 ~ 179314 (+)
G358289 NA non-coding upstream 224554 135381 ~ 138331 (+)
G358344 NA non-coding downstream 2984 379230 ~ 424643 (+)
G358338 NA non-coding downstream 15087 391333 ~ 394621 (+)
LOC117596071 NA non-coding downstream 23101 399347 ~ 400856 (+)
G358359 NA non-coding downstream 109489 485735 ~ 487322 (+)
LOC117596049 NA non-coding downstream 169330 545576 ~ 548885 (+)
ccne1 ccne1 other upstream 11116 344062 ~ 351769 (+)
cmtm4 cmtm4 other downstream 50627 426873 ~ 452014 (+)
c25h16orf87 c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 other downstream 1944878 2321124 ~ 2386730 (+)
igdcc4 LOC108259659 other downstream 2260043 2636289 ~ 2694287 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other downstream 2409381 2785627 ~ 2823338 (+)
cebpa cebpa other downstream 2869464 3245710 ~ 3300683 (+)

Expression


Co-expression Network