G394527


Basic Information

Item Value
gene id G394527
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8912880 ~ 8913084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU467774
CAGGAATACAAGGAGTTACAGCGCAGAGTGAAGAGGGAGCTGTCTAAGGCCAAGCAGGAGGCATATGATGAGTTGTACACTAGGTTAGACActagagaaggacagaaggactTATACAGGTTAGCTAGGCAGAGGGATCGAGATGGGAAGGATGTGCAGCAAGTTAGAGTTATTAAGGATAGAGATGGAAGGGTGCTCACAAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467774 True 205 lncRNA 0.47 1 8912880 8913084

Neighbor

gene id symbol gene type direction distance location
phf3 phf3 coding upstream 154504 8745817 ~ 8758376 (+)
trnal-cag_18 NA coding upstream 216601 8696197 ~ 8696279 (+)
nvl nvl,LOC107558213 coding upstream 226955 8662244 ~ 8685925 (+)
slc12a10.1 NA coding upstream 289487 8609467 ~ 8623393 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding upstream 329790 8496076 ~ 8583090 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding downstream 341578 9254662 ~ 9460105 (+)
LOC113544364 col19a1 coding downstream 700244 9613328 ~ 9874174 (+)
haspin gsg2,LOC108416162 coding downstream 1395909 10308993 ~ 10336062 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding downstream 1833623 10746707 ~ 10749557 (+)
pds5a pds5a,LOC107757607 coding downstream 1926101 10839185 ~ 10872563 (+)
G394520 NA non-coding upstream 60113 8852544 ~ 8852767 (+)
G394373 NA non-coding upstream 251650 8660696 ~ 8661230 (+)
G394306 NA non-coding upstream 446278 8466269 ~ 8466602 (+)
G394291 NA non-coding upstream 472443 8420682 ~ 8440437 (+)
G394262 NA non-coding upstream 627541 8285006 ~ 8285339 (+)
G394555 NA non-coding downstream 94790 9007874 ~ 9008080 (+)
G394747 NA non-coding downstream 552444 9465528 ~ 9465728 (+)
G394750 NA non-coding downstream 557131 9470215 ~ 9471194 (+)
G394757 NA non-coding downstream 577976 9491060 ~ 9491274 (+)
G394812 NA non-coding downstream 651454 9564538 ~ 9570443 (+)
G394251 NA other upstream 653578 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 1481970 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 2011940 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 2294198 6614859 ~ 6618682 (+)
lrba lrba other upstream 2673802 6039414 ~ 6239078 (+)
LOC113544250 NA other downstream 222873 9135957 ~ 9140298 (+)
fam135a fam135a other downstream 1034657 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 1187853 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1286239 10199323 ~ 10239199 (+)
G395242 NA other downstream 1593506 10506590 ~ 10516369 (+)

Expression


Co-expression Network