LOC113544250


Basic Information

Item Value
gene id LOC113544250
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 9135957 ~ 9140298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942942.2
TATCATTGCCTGACTTACCAAGCATTTTGTTGGTCTTGCTGCTCTGGTTTTTGTTAAATGTTCAATAATGTTAATCaatatacttttaaaattttcagcATCACATTTTTTCAAGTTATTAGAGACTAGTACCATCTGGCCAGGCATGGACCCAGCGAATGCTCGGAGTTTGCAAGCGCTGTTCCATGTCACCACCACTTTCTTGGGGTTCATACTCTCGGCCAGTAGCATACAGATGGACCCTGACTGCATAAAAGCAGTCAAGGAGTGGCCACACCCTGAGACTCGGAAACAACTTCAGCAGTTCTTGGGCTTCACAAACTTCTACCGGAAGTTCATCAGGGGGTACAGTACAGTCGCCGCGTCCCTTCACCAGCTCACCTCATCCCTCTGTACGTTCACCTGGTCGCCGGAGGCGGAGCAAGCCTTCCTTACACTTACAGACCTCTTCACAACAGCCCCTATCTTAACCCTGCCTGACCCGATGCTCCAATTCATCATGGAGGTCGACACCTCTTACCTCAGCATGGGGACCGTCCTGTCTCAGAGGTCCCCTAAGGACAACCAAGTGGGGTTATGGTGAATTTGTACTGGGAGGTGTTTGGGGAGAGGAGTAATGACTGAGTTGTGTTGTTCCATATATATTTGcgatctctttctctccctctctcagtgAGCTGAGTGTATGTGAGCAAAGCAAAACAAGAAGCAGCAAACAAGCTCAAAATTtgcagttatttttttctgaaaagcttTACATTACTTATATTTTTGGCCACTTGGCAGAATTCAGGCACAGCAGCATCAAATGGATTTTCCCAGGCTGCCCTACATATGTGGTCCCATAATGGAATGGATTTATTGATATCGCTTGAAGAAGGAGGATTAAGGATTTTGTCCTTGAACTATCTTTTGACTAATGAAGTGTAGAAGTATCATAGATATTAATTTATAGGTCTTATCCAGCTATAAGCTTTATtcaaaaattataaaaagacagacattaaatgtacattttgtcaGCGTCCGCCGGGGAAAAAAAGCTCTTCTATTACTTTGACTAAGCAATACTTTAGTCTGATCTTCTTAGTTTGATAATCCTTAGTACAAgtataagttttttttaacatttttgaacaTGTATAAATCTGTCAAAATAATACTCTACGCTGTGCACTGTTGCTGCTGACATACTATTGTTGAGTAATTTAGTAGCATAGTATTGGGAATTCctggggttttgtttttttattttatttatttatttatttttgattactACAGACTACTGTTATCTGGGTATGGTGTATTACTTTCTTTCATACAGGTGCAGAACATGGGTGCTACCTCTGAGCTGTATTCTTTGGGATGTTTGAATGCTTGAATCCTTTCTCAGATGACATGAGGCTTATAATGTACATGCTGTACATCATATAAAAGTACTTATATTGTACCACAGGGGTTCCTAAACTTTTTGGGAAAGCAACCCCAAATGGACataatgaattttctgtgactcCCAAGCCTTAACCACCCTGCAAGTCCCAGATTTGTaccatttgaacattttatgatGATAGTAACATACAGTGCCActagaaagtttgtgaaccctttacaattttctgtgtttctgcataaatttgacctgaaatgtgatcagaCCTTCATCTATGTCCTAAAACTAGATAAAGTGTTATCtagttataaaattaaattaaattaaattaa
>XR_003404490.2
TATCATTGCCTGACTTACCAAGCATTTTGTTGGTCTTGCTGCTCTGGTTTTTGTTAAATGTTCAATAATGTTAATCaatatacttttaaaattttcagcATCACATTTTTTCAAGTTATTAGAGACTAGATTTCACTGCAGGAATTATGGGGCAGACAGTACCACCACATTTGGAGGGAGGAGCAGGTGTTGTAAATGAATAGTAAAACACAGTTGTCCTATTTACAGACCAACAAATCAAAGGATACCTATACATTTTTGAGTTAAATAAATGATGCGAGGTCTGGTTCATCTTCATTGCCTTCTACATTATTTACTTGAAGTTTTACTGAAGTATAAATAATCAAGCTGACCtgataaattaaatgaaaatctgggAATTTAGAATTTTCAGGTGAGCTGTGAAATAATCATTGCAGTTGAACCAAATATATTGCAAACTAATACTAGGTAATTTCACAGGTCTCAGTCTGTTTTGCACTGCTCAACTTCTTGGAATGCTACTCATTATTCTCAAACATTTCACTGCATCcagtttgcttgcttgctttcttttcaAATTTCCCTTCTCAATATacctttgttttcatttttattctttaaattctTTCTACTAGTATCCTATCTGTACCCTCTCTTTGCTATCTGTGTATGCTTCCCTATCTGGTGCTAAATTTAAGCTTTTTCCACTCCATGGGACTTGTTAAATGACCTACAGTTTCCTGACCTCAATACAATGTTTCAAtactggagtaagcaaagactccTTTAcctccctagaaggcatgaactttaatttgaaaaagcatgttgatgTAAGTTGACATTAAGCTTTGCTAATTAACATTAACTAGTTTtatttaactaagttagcctgtttgttaatgccaggttagaTGAGATTTGAccccagtagctaacataattggctaagcagcaagtcaaattctagctaatagTAAAGAGAGGATATTTACAgcaaactacactatatggcttaaagtatgtggacacctggccatcacacctgtatgagcttgttggacatcccattccaaaccATGGCAATTAACATGAACTTGGTACCCcaattttgtacttttaaaaacCTTCACTCatctgggaagtctttccactagattttggagtgtgtctgtgcagatttgtgcttattcagccacaagagcatagAAGTTGGGCATTGATGTCAAGTGAGATGGCCTGGGgtacagtcagcattccaattcataaCAACAGTGCTCAttgtggttgaggtcagggcttggACCACTCAGTTTCCCATATCAACCTTGTCGattcatgtctttatggacctagctttgtgcacagggccattgtcatgatgaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942942.2 True 1731 mRNA 0.39 2 9135957 9140298
XR_003404490.2 False 1371 misc_RNA 0.37 2 9135957 9137421

Neighbor

gene id symbol gene type direction distance location
phf3 phf3 coding upstream 377581 8745817 ~ 8758376 (+)
trnal-cag_18 NA coding upstream 439678 8696197 ~ 8696279 (+)
nvl nvl,LOC107558213 coding upstream 450032 8662244 ~ 8685925 (+)
slc12a10.1 NA coding upstream 512564 8609467 ~ 8623393 (+)
LOC113544387 sptbn1,LOC108260989,LOC108414519,LOC105890945 coding upstream 552867 8496076 ~ 8583090 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding downstream 114364 9254662 ~ 9460105 (+)
LOC113544364 col19a1 coding downstream 473030 9613328 ~ 9874174 (+)
haspin gsg2,LOC108416162 coding downstream 1168695 10308993 ~ 10336062 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding downstream 1606409 10746707 ~ 10749557 (+)
pds5a pds5a,LOC107757607 coding downstream 1698887 10839185 ~ 10872563 (+)
G394555 NA non-coding upstream 127877 9007874 ~ 9008080 (+)
G394527 NA non-coding upstream 222873 8912880 ~ 8913084 (+)
G394520 NA non-coding upstream 283190 8852544 ~ 8852767 (+)
G394373 NA non-coding upstream 474727 8660696 ~ 8661230 (+)
G394306 NA non-coding upstream 669355 8466269 ~ 8466602 (+)
G394747 NA non-coding downstream 325230 9465528 ~ 9465728 (+)
G394750 NA non-coding downstream 329917 9470215 ~ 9471194 (+)
G394757 NA non-coding downstream 350762 9491060 ~ 9491274 (+)
G394812 NA non-coding downstream 424240 9564538 ~ 9570443 (+)
G394813 NA non-coding downstream 678722 9819020 ~ 9820350 (+)
G394251 NA other upstream 876655 8258928 ~ 8259302 (+)
G393467 slit1 other upstream 1705047 7427618 ~ 7430910 (+)
LOC117596330 NA other upstream 2235017 6896993 ~ 6900940 (+)
LOC113544406 LOC108260665,LOC108260638 other upstream 2517275 6614859 ~ 6618682 (+)
lrba lrba other upstream 2896879 6039414 ~ 6239078 (+)
fam135a fam135a other downstream 807443 9947741 ~ 10050101 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other downstream 960639 10100937 ~ 10116924 (+)
LOC113544300 NA other downstream 1059025 10199323 ~ 10239199 (+)
G395242 NA other downstream 1366292 10506590 ~ 10516369 (+)
G395365 NA other downstream 1520648 10660946 ~ 10661703 (+)

Expression


Co-expression Network