zcchc7


Basic Information

Item Value
gene id zcchc7
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 13246937 ~ 13292141 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301106.1
TATCAGTTGgccaaccatttttttttcttctcacagaCCGGAAGTTCGCCTGTCTTCTGTGTTGTCTCGCTTCAAAGCTGGAAAACTAAACAAGCAGgCTGTCGCTCGAGATGTTCTCAGGCTACCAGGAGCGGGAAGAGTACGAAGACGAGCTGTACGCCGAGGAAAAACACGATGACGACTCTGAGCCTGACAGCGATCTCGAGTTCCAGCTCTATTCCCAGCTCCACTACTGCACCGATGACCCGGAGAACCATCCAGAGAACCGTGACGAGAACCAGGGAAGCTCCGGTCATGAGACACCTCAGGAACCTCAACCTGGCCGTAGAGTCCAAcctcctgctgctcctcccGATGAAGTCATTCTGATCGACTCGGGCCCGGATGTCATCACTCTTTCGGATAACACAGAGGaagaggacagtgtgtgtgccaggaaaggtcagaggtcaaaagGGAAAGGAGTGGCTCCCGTTTCACAGCCTCAGCATCATCGTCAAAGTGAGGAAGTGGTAGTCTTGGACTCGGAGTCGGACCAGAGTTCAGATTCGGAATCGATTCCGCCGTACGTGGTGGATCCGGCTTTGGATTcggattctgattctgattcggACGGATTGGAGAGCTGGATGATTCTGGGTCGGGAAAAGGAGGAAGGAGACCAGGACATACAGCTTAACGTCTTTACGGTCCGCAACAGGGATCAGCcagAGTTTGTGAGCATCGGAGGTGACGAGCAGAACTGGGCCGTCTCGGACAAAGACAAGGAGgctcaGATCTGCAACAAAGGCGCCGGCTTGAGGCGCGTCTCAAACCGCTACTACACCGAGAAGACGGTCACCTGCCGCAACTGCAACAAGCTCGGCCACCTCTCCAAAAACTGCCCCACTCCCAAGaaGGCACCATGTTGTTCGTTGTGTGGTCTTCAGGGCCATTTCATGAAGACCTGTCCGAACCGTCACTGCTCGAACTGCGCTCTTCCAGGTCACACGTACGACGACTGTCTGGAGAGAGCGTACTGGCACAAACGCTGCCACCGCTGCGCCATGACCGGCCACTTCGCCGACGCCTGTCCTGACATCTGGAGGCAGTATCACCTCACGaCGACGCCGGGACCCCCGGTCAAATCCCCTGATCCCGACGCTCACAGATCTCCTGCGTACTGCTACAACTGCTCTGGAAAGGGACACTTTGGCCATgagtgcaCAGACAGGAGGATGTTTAACGGAACGTATCCCACGCTGCCTTTCGCCTCCTCGTACGACACCCAGCACGACATCAAACGGAGAGAGCATCGAGCTCACCTCCGAGCCAAAGagctCCAAGAGGCCGGCCTTCTAGAGCAGGCCGAAGACGCTCCCACTCCCCAGCCTCCCCGAAAGAAAGcgaaaaacacacatttccgGTCTGCACCAGTCCctcacacacccaacacacacacaccgaagaGACGCATCGCCCACACGCCTAAACACCCTGCTCAGACCACGcccaaacccaacacacacctgcactgGCAGGACGACACACCCGTCCccaagaagaagaataagaagaacaTGACGGCAAGCACACCTGGTCCTTACAGCGCGGCCACGCCCCAGTTCGAgggcaagaagaagaagaagaacaagaaacagaaacaaaatgcGATGAACGAGGAACAGGACTTTCCCCGAAGCTTCCAGAAAAGTCCCTGTAACAAAGGAGCGCTCATTCACACTCCGCCGTATAGAGGGAGGAAAAGCCCGGGAGTGCTGTTCGGCTCGGAAaagagcaagaagaagaaacacaAGGAGGAAAAAAGGGCGAGGAAAGCGGCCAGGGACCCCGAGAACCTGTTTCTGATCAAACAAAGGAAGCGTAgtagatagtgtgtgtgtgaggaatgaGGGAATGAAAGgaaagtctgtgtgtgagagaagaaaCAGTGAACGACTAGTAACGAGTAAAGCTCTGGCTTTTCTTTGTCTCCCTCTAGTGTCCATCATCAGTATTACACACTGAGtattacatacacactctcatatAACTAGCAGGTGATTTAATTTCGGCactagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcagtctcaCACAGTTTTCTCCGTACCCTAACATAGATGGTGTCcgatgtttgtttctttagatGTAGTAGAATCCAGAGTAACACGAAAACCTGTTCAAAAGTACAcactacagtaaacacactgatgTCGCAAATCTGTAAAACCTTCTACATTCCCTTTTACATCTCAACAGCTACGAAAAGGATTTTTGAAACTTCTGGTTTGTCACTGTTCCTCTGTTTGTGCTGCTCTCATCAATGATCCGATCTGAAGTTCCTGCTGCTGTGAACGCTGCTGCCAAACACACCGGCCATTTTAACGTTCACCTTCGAAGGATCTTTCAGAAAACCAGACGAAAACTCTGCTTGTACATAAGTTTGTAgaatttttctatttaaattgTGTACACGGCTGTGGCTCTGCTGCAGCAGTAAATAAAAGCAGGAGTGTTGGTATTCGG
>XR_004577482.1
TATCAGTTGgccaaccatttttttttcttctcacagaCCGGAAGTTCGCCTGTCTTCTGTGTTGTCTCGCTTCAAAGCTGGAAAACTAAACAAGCAGgCTGTCGCTCGAGATGTTCTCAGGCTACCAGGAGCGGGAAGAGTACGAAGACGAGCTGTACGCCGAGGAAAAACACGATGACGACTCTGAGCCTGACAGCGATCTCGAGTTCCAGCTCTATTCCCAGCTCCACTACTGCACCGATGACCCGGAGAACCATCCAGAGAACCGTGACGAGAACCAGGGAAGCTCCGGTCATGAGACACCTCAGGAACCTCAACCTGGCCGTAGAGTCCAAcctcctgctgctcctcccGATGAAGTCATTCTGATCGACTCGGGCCCGGATGTCATCACTCTTTCGGATAACACAGAGGaagaggacagtgtgtgtgccaggaaaggtcagaggtcaaaagGGAAAGGAGTGGCTCCCGTTTCACAGCCTCAGCATCATCGTCAAAGTGAGGAAGTGGTAGTCTTGGACTCGGAGTCGGACCAGAGTTCAGATTCGGAATCGATTCCGCCGTACGTGGTGGATCCGGCTTTGGATTcggattctgattctgattcggACGGATTGGAGAGCTGGATGATTCTGGGTCGGGAAAAGGAGGAAGGAGACCAGGACATACAGCTTAACGTCTTTACGGTCCGCAACAGGGATCAGCcagAGTTTGTGAGCATCGGAGGTGACGAGCAGAACTGGGCCGTCTCGGACAAAGACAAGGAGgctcaGATCTGCAACAAAGGCGCCGGCTTGAGGCGCGTCTCAAACCGCTACTACACCGAGAAGACGGTCACCTGCCGCAACTGCAACAAGCTCGGCCACCTCTCCAAAAACTGCCCCACTCCCAAGaaGGCACCATGTTGTTCGTTGTGTGGTCTTCAGGGCCATTTCATGAAGACCTGTCCGAACCGTCACTGCTCGAACTGCGCTCTTCCAGGTCACACGTACGACGACTGTCTGGAGAGAGCGTACTGGCACAAACGCTGCCACCGCTGCGCCATGACCGGCCACTTCGCCGACGCCTGTCCTGACATCTGGAGGCAGTATCACCTCACGaCGACGCCGGGACCCCCGGTCAAATCCCCTGATCCCGACGCTCACAGATCTCCTGCGTACTGCTACAACTGCTCTGGAAAGGGACACTTTGGCCATgagtgcaCAGACAGGAGGATGTTTAACGGAACGTATCCCACGCTGCCTTTCGCCTCCTCGTACGACACCCAGCACGACATCAAACGGAGAGAGCATCGAGCTCACCTCCGAGCCAAAGagctCCAAGAGGCCGGCCTTCTAGAGCAGGCCGAAGACGCTCCCACTCCCCAGCCTCCCCGAAAGAAAGcgaaaaacacacatttccgGTCTGCACCAGTCCctcacacacccaacacacacacaccgaagaGACGCATCGCCCACACGCCTAAACACCCTGCTCAGACCACGcccaaacccaacacacacctgcactgGCAGGACGACACACCCGTCCccaagaagaagaataagaagaacaTGACGGCAAGCACACCTGGTCCTTACAGCGCGGCCACGCCCCAGTTCGAgggcaagaagaagaagaagaacaagaaacagaaacaaaatgcGATGAACGAGGAACAGGACTTTCCCCGAAGCTTCCAGAAAAGTCCCTGTAACAAAGGAGCGCTCATTCACACTCCGCCGTATAGAGGGAGGAAAAGCCCGGGAGTGCTGTTCGGCTCGGAAaagagcaagaagaagaaacacaAGGAGGAAAAAAGGGCGAGGAAAGCGGCCAGGGACCCCGAGAACCTGTTTCTGATCAAACAAAGGAAGCGTAgtagatagtgtgtgtgtgaggaatgaGGGAATGAAAGgaaagtctgtgtgtgagagaagaaaCAGTGAACGACTAGTAACGAGTAAAGCTCTGGCTTTTCTTTGTCTCCCTCTAGTGTCCATCATCAGTATTACACACTGAGtattacatacacactctcatatAACTAGCAGGTGATTTAATTTCGGCactagtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcagtctcaCACAGTTTTCTCCGTACCCTAACATAGATGGTGTCcgatgtttgtttctttagatGTAGTAGAATCCAGAGTAACACGAAAACCTGTTCAAAAGTACAcactacagtaaacacactgatgTCGCAAATCTGTAAAACCTTCTACATTCCCTTTTACATCTCAACAGCTACGAAAAGGATTTTTGAAACTTCTGGTTTGTCACTGTTCCTCTGTTTGTGCTGCTCTCATCAATGATCCGATCTGAAGTTCCTGCTGCTGTGAACGCTGCTGCCAAACACACCGGCCATTTTAACGTTCACCTTCGAAGGATCTTTCAGAAAACCAGACGAAAACTCTGCTTGTACATAAacaatgccacagccatccttAGAGAGGAGTCCAGGGAGCAAAGGGCATCATacgctcttttttttccccctgtcaATCGCCAATCGTAcgctgtgagctcatgtatgcggaagagggcagatagcgctttcctctgagtatgTTCCACCGCCTTGTGATgcagcacgagcagcagtttgaaaaagatGCACTTAagtggcttcacgtgtctcagaggaagcacgttttatgggagagctggctgatggaaggaaaaaaaaaattcctcattTCAGTTGACTAGCAGAAGGATTCCGATAGATTCagtagttttgcactgaagctacaaggctaatTTTGAAGTGTTGGGAAAGAAGAGGAGAACGTAGAACCAACTGTCTGaacaataacataaaaaatCATCATCGCCTCCGCTGCTCACTTCAACCTGCTTCG

Function

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 7-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K12597 AIR1_2; protein AIR1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301106.1 False 2563 mRNA 0.52 9 13246937 13290661
XR_004577482.1 True 2913 misc_RNA 0.51 11 13246937 13292141

Neighbor

gene id symbol gene type direction distance location
melk melk,LOC107750464 coding upstream 75154 13160814 ~ 13171783 (+)
zgc:195282 zgc:195282,LOC108413380,LOC108260812,LOC107702293,LOC107591529,LOC107754142,LOC107656338 coding upstream 94459 13146821 ~ 13152478 (+)
dnah6 dnah6 coding upstream 286889 12903407 ~ 12960048 (+)
primpol primpol coding upstream 344008 12895722 ~ 12902929 (+)
LOC113547349 NA coding upstream 485904 12757558 ~ 12761033 (+)
LOC113547356 frmpd1 coding downstream 18084 13310225 ~ 13336475 (+)
pgm2 pgm2,LOC107551595,LOC107746017,LOC107591526,LOC107702355 coding downstream 46037 13338178 ~ 13349598 (+)
tbc1d1 tbc1d1 coding downstream 59137 13351278 ~ 13405103 (+)
fam114a1 LOC108260709 coding downstream 168703 13460844 ~ 13471423 (+)
klhl5 LOC108260707,LOC108412945,LOC107656383,LOC107565971 coding downstream 211179 13503320 ~ 13526996 (+)
G396653 NA non-coding upstream 136493 13108524 ~ 13110444 (+)
G396572 ncapd3 non-coding upstream 359755 12838544 ~ 12887182 (+)
G396390 NA non-coding upstream 649719 12589617 ~ 12597218 (+)
G396389 NA non-coding upstream 651133 12588670 ~ 12595804 (+)
G396380 NA non-coding upstream 691908 12546786 ~ 12555029 (+)
G396818 NA non-coding downstream 91352 13383493 ~ 13457787 (+)
LOC113547396 NA non-coding downstream 195615 13487756 ~ 13502667 (+)
G396866 NA non-coding downstream 346741 13638882 ~ 13640567 (+)
G396939 fat1,LOC108441695 non-coding downstream 646846 13938987 ~ 13957490 (+)
LOC113547385 NA non-coding downstream 769763 14061904 ~ 14077734 (+)
LOC113547319 NA other upstream 86583 13155276 ~ 13160354 (+)
G396005 NA other upstream 1144172 12096971 ~ 12102765 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other upstream 1694395 11528553 ~ 11552542 (+)
prom1b prom1,LOC108434342 other upstream 1843663 11352186 ~ 11403274 (+)
smim18 smim18 other upstream 1981767 11261498 ~ 11265170 (+)
klf3 klf12,LOC106536821,LOC108260714 other downstream 145471 13437612 ~ 13456819 (+)
LOC113547324 NA other downstream 240840 13532981 ~ 13546963 (+)
G396887 slc25a4,LOC107656452,LOC107562743,LOC107092569 other downstream 434503 13726644 ~ 13775822 (+)
chic2 chic2,LOC108260850,LOC103029042,LOC108441324,LOC107382195,LOC103353160,LOC102236523,LOC101486940,LOC107714214 other downstream 1523321 14815462 ~ 14868291 (+)
spink4 isk1 other downstream 1675037 14967178 ~ 14969349 (+)

Expression


Co-expression Network