LOC113547385


Basic Information

Item Value
gene id LOC113547385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 14061904 ~ 14077734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404814.2
GAGCATCTGACTCTCATGCTACTGACCTGAGTTCCAGTCCTGGGCTCGATGTTGGTGAACTTTCCTGTAAGGAGAAacgtgtttatgtaacatttggtgaaggagtctccagtgtcggtgctttgtagcagtcagagCTGTTCTGTTCATTGTCTGCGATGGAGGAGATGACATGGACCAGGAGGTTACAGTGAGGTCAATACAGATGGACTGGAGCTTCAGGAGGCCGTCACACTCACCATCTCTCACAGGGAGCTGGAACCATAACGACCAAAACGGACCAATCAGCAGGAAGAGTTTGGGccattaaccaatcagaaatcTCTGATCCGGACAGGAGGCTGTATCATTAAACACAGGTGCACTGTTCACTCCTACAGCTGTCACATTCGATCATTAGAAACCTAAATTAATCCAGTGTCTCCATGAAATGAAGAACAAGagcaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404814.2 True 452 lncRNA 0.47 3 14061904 14077734

Neighbor

gene id symbol gene type direction distance location
LOC113547390 NA coding upstream 183061 13874373 ~ 13878843 (+)
LOC113547374 NA coding upstream 189561 13868826 ~ 13872343 (+)
LOC113547373 NA coding upstream 195263 13861940 ~ 13866641 (+)
LOC117596355 NA coding upstream 200646 13859669 ~ 13861258 (+)
LOC113547375 NA coding upstream 206406 13853275 ~ 13855498 (+)
frg1 frg1,LOC107702291,LOC107721419,LOC107656998 coding downstream 116259 14193993 ~ 14200839 (+)
asah1b asah1,asah1b,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding downstream 131260 14208994 ~ 14221738 (+)
tusc3 tusc3,LOC106602198,LOC107731701,LOC107702329,LOC107554394 coding downstream 444522 14522256 ~ 14573279 (+)
micu3a micu3,LOC107562929,LOC107747394,LOC107656542,LOC103467247,LOC102779354,LOC100706756,LOC101479276 coding downstream 560519 14638253 ~ 14667000 (+)
vps37a vps37a,LOC107554395,LOC105892576,LOC104947301 coding downstream 592550 14670284 ~ 14677126 (+)
G396939 fat1,LOC108441695 non-coding upstream 104414 13938987 ~ 13957490 (+)
G396866 NA non-coding upstream 421337 13638882 ~ 13640567 (+)
LOC113547396 NA non-coding upstream 559237 13487756 ~ 13502667 (+)
G396818 NA non-coding upstream 604117 13383493 ~ 13457787 (+)
G396653 NA non-coding upstream 951460 13108524 ~ 13110444 (+)
G397215 NA non-coding downstream 150087 14227821 ~ 14251757 (+)
G397217 NA non-coding downstream 174867 14252601 ~ 14306567 (+)
G397214 NA non-coding downstream 177310 14255044 ~ 14255537 (+)
G397246 NA non-coding downstream 220904 14298638 ~ 14300987 (+)
G397257 NA non-coding downstream 290503 14368237 ~ 14369258 (+)
G396887 slc25a4,LOC107656452,LOC107562743,LOC107092569 other upstream 286082 13726644 ~ 13775822 (+)
LOC113547324 NA other upstream 514941 13532981 ~ 13546963 (+)
klf3 klf12,LOC106536821,LOC108260714 other upstream 605085 13437612 ~ 13456819 (+)
zcchc7 NA other upstream 769763 13246937 ~ 13292141 (+)
LOC113547319 NA other upstream 901550 13155276 ~ 13160354 (+)
chic2 chic2,LOC108260850,LOC103029042,LOC108441324,LOC107382195,LOC103353160,LOC102236523,LOC101486940,LOC107714214 other downstream 737728 14815462 ~ 14868291 (+)
spink4 isk1 other downstream 889444 14967178 ~ 14969349 (+)
LOC113525056 NA other downstream 906161 14983895 ~ 15008598 (+)
clta clta,LOC107564055,LOC107723183,LOC107692603,LOC106609887,LOC106602594 other downstream 989867 15067601 ~ 15126180 (+)
G397576 LOC108260692,LOC100305006,LOC108260693 other downstream 1180041 15257775 ~ 15263881 (+)

Expression


Co-expression Network