LOC117596355


Basic Information

Item Value
gene id LOC117596355
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 13859669 ~ 13861258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577493.1
gggaacccatcctcatctggacgACACccgatagtTTATTGTTTACACGGCGCTGGTAAACACCTGAAACTTGGCCGGTGGAGGTGGACTTACGGTAACGTAAAATGAACTCACCTTGACCTTGGTGTTCATCATTTTCACTGGCTGAGTCGGCTGGACAAGGGGATCAGACTACTCTGAAACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577493.1 True 185 ncRNA 0.49 3 13859669 13861258

Neighbor

gene id symbol gene type direction distance location
LOC113547375 NA coding upstream 4171 13853275 ~ 13855498 (+)
acsl1a acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 24772 13812946 ~ 13834897 (+)
cfap97 NA coding upstream 88938 13763034 ~ 13770731 (+)
ufsp2 ufsp2,LOC107579280 coding upstream 97886 13754822 ~ 13761783 (+)
LOC113547400 NA coding upstream 105381 13744748 ~ 13754288 (+)
LOC113547373 NA coding downstream 682 13861940 ~ 13866641 (+)
LOC113547374 NA coding downstream 7568 13868826 ~ 13872343 (+)
LOC113547390 NA coding downstream 13115 13874373 ~ 13878843 (+)
frg1 frg1,LOC107702291,LOC107721419,LOC107656998 coding downstream 332735 14193993 ~ 14200839 (+)
asah1b asah1,asah1b,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding downstream 347736 14208994 ~ 14221738 (+)
G396866 NA non-coding upstream 219102 13638882 ~ 13640567 (+)
LOC113547396 NA non-coding upstream 357002 13487756 ~ 13502667 (+)
G396818 NA non-coding upstream 401882 13383493 ~ 13457787 (+)
G396653 NA non-coding upstream 749225 13108524 ~ 13110444 (+)
G396572 ncapd3 non-coding upstream 972487 12838544 ~ 12887182 (+)
G396939 fat1,LOC108441695 non-coding downstream 77729 13938987 ~ 13957490 (+)
LOC113547385 NA non-coding downstream 200646 14061904 ~ 14077734 (+)
G397215 NA non-coding downstream 366563 14227821 ~ 14251757 (+)
G397217 NA non-coding downstream 391343 14252601 ~ 14306567 (+)
G397214 NA non-coding downstream 393786 14255044 ~ 14255537 (+)
G396887 slc25a4,LOC107656452,LOC107562743,LOC107092569 other upstream 83847 13726644 ~ 13775822 (+)
LOC113547324 NA other upstream 312706 13532981 ~ 13546963 (+)
klf3 klf12,LOC106536821,LOC108260714 other upstream 402850 13437612 ~ 13456819 (+)
zcchc7 NA other upstream 567528 13246937 ~ 13292141 (+)
LOC113547319 NA other upstream 699315 13155276 ~ 13160354 (+)
chic2 chic2,LOC108260850,LOC103029042,LOC108441324,LOC107382195,LOC103353160,LOC102236523,LOC101486940,LOC107714214 other downstream 954204 14815462 ~ 14868291 (+)
spink4 isk1 other downstream 1105920 14967178 ~ 14969349 (+)
LOC113525056 NA other downstream 1122637 14983895 ~ 15008598 (+)
clta clta,LOC107564055,LOC107723183,LOC107692603,LOC106609887,LOC106602594 other downstream 1206343 15067601 ~ 15126180 (+)
G397576 LOC108260692,LOC100305006,LOC108260693 other downstream 1396517 15257775 ~ 15263881 (+)

Expression


Co-expression Network