AMCG00000056


Basic Information

Item Value
gene id AMCG00000056
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1361377 ~ 1383054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000056
AATCAGTCGTTTGATCTTCACATGCGCAGTACACACTGGCAACTGACTAAAGGAATTTTTTAGACCCTGTACCCTGGTTTTGAGTCTGCAGCTGTGAGTGGGTTATTATACTTGGAATTACTATCTCGCTGCAGAGCTGGCTGCTATTGGAGGAGCCCCCCACAACTCAGGAAACATGGCGGAAATGTCAGTGGAAGACATTACCATGCGGGCCAACCAGCTGACTGATGAGTCGCTGGAGAGCACCAGGAGGATGCTACAGTTGGCAGAGGAGAGCAAAGAGACAGGTGTGAAGACTATTGTAATGCTGGATGAGCAGGGAGaGCAACTGAAGCATGTAGAGGAGGGAATGGACCAAATCAATGAGGACATGAGACTAGCAGAGAAAAACCTGACAGATCTGTCCAAGTGCTGTGGCCTGTGCGTTTGCCCCTGTGACAGTGTGAGGAAGTTTGAGCTTGGTGATCGTTACAAGAGGACCTGGGGCACAGGGAGCGTCCGTGAAGGTCACACTGGCACAGAGGGGCCTGTGGTGTCCAGTCAGCCTCCCAGCATCCATAATGGACAGGCAGGCAACACCCAGGCCTCTGGACAAGCATCTGGGCCCTACATTAAGAGGATAACAAATGATGACCGGGAGGATGAGATGGAGGAGAACCTGACTCAGGTGGGCAGTATCATTGGCAACCTGAAGAACATGGCTATGGACATGGGCAACGAGATCGACAAGCAGAATAAGCAGATTGACCGCATCACAGATAAGGCTGAAATGAATAAAGGGCGCATTGACGAGGCCAACCAGAGAGCTGCCAAACTCATCCAGTAGAGGGATAGACAAAGTACATACTTCTGGTCTGTGGCCTGCTGCAGCTTTCACACCAACCATCAGACTCCTTAAGAGCTActccctctttctgtctttcagtcTTTATCTCTGTGggacaattaaaataagaagaGTAACATGGCATTGTGAAGCTCTTGAGTGCTTGTCAATCTTGTCAATGCTCccagaatgaaaaacaacaggtgATAAGCATGAGAGTTTGTTAGAATTATTGTTAGAGTTGAGGATATGGTAGTGTTCGATAGGAGCACTGAACCCTGcctttaatttgtgttcatCAGTACATGGCCCGTTTTCAGTAAAGTAAGTAGGTTGTGAATGCAGGGTGACAgtaattttgaaagcaaaggtgcttcaacagtCCCACAGATATATGAAACCTATGTACATCACCGCTGCAATCTTTCAACCTAATTCACTGCAGTTTAGTTCTATAAGGTTGCCTGTCACAGGAGACTGAATCTTAGGTTTCTTACTTATTTTGAACCTGTGTAACAAATATTAGGCCTACAAAGCATAATGGGACCAACCAACCAATCATTCTATTTCTAGTGTATTACCTGGCCCCCAATATAAATGATCTCAGAGCTGAAAGGTCCTCTGTTCCATTTAGACTACTTAATTTACAAATCTGTTTCTTGAATGCACTAATTTATTAGTTTATGCATAAGCAAGTTCTAATTCACAGGTGCCTCCTTCCTGAAATCACTGTGGGAACACCTGGGAAAAACTTCTGTCACTCCCCTGATGGAGCCTGTAGTTCAGAAATGAATAAGCATGTGTGAGGTTCTGCTTTAAGTGCTTTTTGGCCTGCTGTGCATTCAATAGCTGAACTTGGGactgtagtactgtagtgtAGCTGCAGTTTAAATGTTGTAACCTGCAGCAGTGACTTAAAGTTTTGTACATAATTGTTATAGATAATGCAGTGATAGTGAAGCAAGGTTGCTGAATCAACAGGACATTTTAATAATcgctgcagttttttttttttttttttttttttttttcccccaagtcccattttcatttgttaatagatataaaaatgcatttggcaGTGACACTGTTACCAGGCTAGAATCCAAAATGTAGGACTTGAATGGGCCACATGAAGTACATTTCCAGTAATGCCAAACATCAAGCTAATCCCTCACTCGACCTTGTTGGACAACACTATTTGGGcattattttacagttcaaGCTTCACATGAATTCTTTGCCAAGAtccattgttttgcatttcccaaGAATTCATGTTTTACAGTCTGCTCTTCTGTTGGTCTCGGATCAGTCTCCAGTCTTGTTAATGCTACaacaatttttatttacatCTCTGTAAAgattaaacattgatttaatttattctcaTGTATGAATGAAAAGTAGTAATACGGGGCTTGGGTTTTCTGAGAGGATGCCGGATGAATGATGCTTCTAACATCGGGGACCCCCATGTTATTCTGATGAAAATAATTTGTCTCCTACAAACTGCTCTTATACTAACCTGTTTTGTGCCAGTCACTGGATCAGAAAATGCTGGATTTCAACCTACAACAGGGGAACGTTTTGTAATGATGATTCTCGTAATATTTTCAGATTGATTTATGCCACTTTCTTTTGCATTTATCTTTTCCTGTGTACTTGGCTGAATGCTTTGCAAGTAATTTATGAGCTCTTACTTTAAAACCTGTCCTGCAGTGAAAAGCTTCTGTGGATAGAGCTTGTTGCAACACGTCCTTTTTCTGATTCATAATGGAAGATCTTCTCATGCCCTTAGATTCTGCCGAGTCAGTGCCTAGTGGTATCCAGTGGGTGATGAGGCAAATGTATAGAACAAGTGAATTGACTGTAGTAATGCTGTAGGCACACCAGTGATTTGAAGGATTAAGTTTATAGCTAGAGCGGAGAATGCAATTGTACACTGAAGTGTAATTTTCAGTTTACCAACAAATCTTggcattaaaattaaacaaaaacaaagtttggcTATTACTAGTAGCATTCAGTTGAAAATATCTAAGCAGAAATAACTGCTCTGATAGTATAATGGTGAATGATAACATCTGGCCTTGGAAGAAGTCACAAAATGGTCCTCAAAGGTGCATTTTAATGTTGGCTCATTTGACTGTGTTGTAACAGCCTAGGTTAGAGTGTTTCCCCTACACATTTACAGTCGGAAAGATGGGCTGGTACTTGCTGGGCTCACTGGGATGCATTTGCCTTGTCCGGGATGATGAGATGGACTGAGGTCCTTCTGCAGTTTTTACAGATATGTATTGTAGTGCCTAAGATGTTAGAGGcccaataaaaacattttaaaacgtTGCCTTTATCTGACACATTGCCTTTTCCTCCTAAGTAATGTACAGACTCATTACAGTATCTTGAGTTGTGAGAGTCATAAAAAGATCTTCTGGGATTCTGGAAAAAGATAAATGGATTGGCACTTGCTAAGATGTGAGAATTTGGATCATCTAGAGCTGTGgtctcaattcctggagggccgtgtgtatgctggtttatattgcttatatatattttataagcaactgtaccttgaatcaaatgctctTTTTGACCATCGACTGTAAAATACCTTGCAAtatcaattttttaaatgtcaaattgaaaaatgaattggacaaattaagtaattaaggacTCGGCTGGAACGAAAACCTGCATACACACGGCCcaccaggaattgagtttgagaccactgatCTAGAGAATGGAAAGATGTTGACATGCAATTTCTTAGTCCATTGTATAGACCTTGCTGAACATCAGTAAGTAATGACTGAATTTAGAATTCCCAGATGcctaatataaatgtaattgtcttCCTTACAATCCCCCCATGAAGAATGGAAATCCTTTCTAATGTGTTAAAGGGTTGTGCTTTCAAACCCACACAATTTTTGAAAAGCTTTTATTATTCGGATTGCCCTGCAACTTTGTTTTTAGGAAGTGTGCCTACAACTATTCTATTCAGGTGCAACTGCAGTTTTCTCAGTAACTCATAACTGATAAATTAGCTCAATGAGAGCCTTCAGGTCAATTTACTCCTTTGTTTGGAGGCTTCCTGCAATGCACCAATCCAGTCTGTTTCGGGCACAATTTTGATGTTATTACAGTACAAtctatgtataatattttgctgtgaaatttaatttcattttacataaGGTGATGCAGGCTGTAGAATAAAAGAGGGGAATGTATTCCACTGTTTATAGGCAGactattttttgggggggtttgtttttaataatttcaatgtatttatcaatattGTGATTAAAGATGATCTGTGGTGATGCTTGTCAATACAAATGCCCCCCCACACCTCTGTCAATTGACAGCTTCTAAACATGACATTTAGTTGAGGCTGTCACGGCAATAATTTTCTGGAACATAAACTCTTGTATCGGTTTATCAAATGTAGACTCcaaatttaattatgcatttgttttccctgtattcaatgtttttgttggctttttttttttttttttttttttaatcctcagTAGCTGTGGATTTGTAATTAATGAAGTGCCTTCTTCCTACCTAAATTGCATTATAGCCTTTGTACTCTTCCAttctcattttaatgtttacaggtatatttttaataaacttgaaATGCATTCTTGTCCTTA

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K08508 SNAP23; synaptosomal-associated protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000056 True 4515 mRNA 0.40 8 1361377 1383054

Neighbor

gene id symbol gene type direction distance location
AMCG00000055 NA coding upstream 66612 1243198 ~ 1294765 (+)
AMCG00000054 NA coding upstream 196973 1139043 ~ 1164404 (+)
AMCG00000053 vps39 coding upstream 318774 991040 ~ 1042603 (+)
AMCG00000052 NA coding upstream 382833 957706 ~ 978544 (+)
AMCG00000049 NA coding upstream 462832 886906 ~ 898545 (+)
AMCG00000057 NA coding downstream 310098 1693152 ~ 1719606 (+)
AMCG00000066 NA coding downstream 357755 1740809 ~ 1781771 (+)
AMCG00000067 NA coding downstream 477454 1860508 ~ 1860744 (+)
AMCG00000072 mta1,LOC102776995,LOC107741866,LOC107666257 coding downstream 630493 2013547 ~ 2034642 (+)
AMCG00000070 tmem229b,LOC107752730,LOC107708331,LOC102785226 coding downstream 731607 2114661 ~ 2115167 (+)
G147466 NA non-coding upstream 172335 1188808 ~ 1189042 (+)
G147380 NA non-coding upstream 187075 828455 ~ 1174302 (+)
G147393 NA non-coding upstream 291607 904970 ~ 1069770 (+)
G147405 NA non-coding upstream 419466 940858 ~ 941911 (+)
G147314 NA non-coding upstream 875916 482114 ~ 485461 (+)
G147551 NA non-coding downstream 106526 1489580 ~ 1492313 (+)
G147564 NA non-coding downstream 203003 1586057 ~ 1586324 (+)
G147565 NA non-coding downstream 205023 1588077 ~ 1588295 (+)
G147579 NA non-coding downstream 230256 1613310 ~ 1615951 (+)
G147580 NA non-coding downstream 236118 1619172 ~ 1620075 (+)
G147416 NA other upstream 244427 1063085 ~ 1116950 (+)
G147311 NA other upstream 862866 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 1106936 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 1257015 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 1323602 28694 ~ 37775 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 652969 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 1020676 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 2307718 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 2337931 3720985 ~ 3724316 (+)
G148040 NA other downstream 2377125 3760179 ~ 3760624 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location