AMCG00000283


Basic Information

Item Value
gene id AMCG00000283
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9688747 ~ 9705449 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000283
GTCTTCATCACCCATGGGGATGTGGGCGTAGGAACCATTGTTGGCTCAGCGGTATTCAACATCTTGTGCATAATTGGTGTCTGCGGGATTTTCGCAGGGCAGTTCATTTATGATGAGAAAATTGTCTGGTGGGAGAGCCTAATTCTCATCATCATGTATGCCGGCTACATACTGATCATGAGATTTAACACAAGTATGCAGAATTACTTCACAGGCAAGGTGGAGAAGAATGTAGCCAATGGTAACACAGTGAGCAACGAAATGGAGGATGGTAATGCTTGTTTTGACATTAGGTGGGATGACCCATCGGTGCCATTACTGAGGGAAGTGAAAATGACCAAGACCTACAGCAAGACATCCGTGGTCATGGTGGACGAGATCATGTGTTCCAGCCCCCCAAAGTTCAGGTTTCCCGAAGCTGGGCTGAGGATCATGATAACCAACCACTTTGGGCCCAAGACTCGATTACGGATGGCCAGCAGGCTGATCATTAatgagCGTCAGAGGTTGGTCCAGGCTGCCAACGGTGTGGATAAGGTGATCCTTGATGGGAAGCACGATAGCATCGAGAATGGAAACGTCCCGGAAGACAAACAGAGCGAGGAGGAAGAGGCCGACTTCTCATCTCCATTTTCAGTTCCAGGTGGCTgtatgaacaaaacaaagtggCTCCTCTCGTGGCCATTGCTGCTGATCTTGTATTTCACCATCCCCAACTGCGCCAAGCCTAGATGGGAGAAATTCTTTATGCTTTCATTCGTCTTGTCCACTTTGTGGATCGCGGTCTTCTCTTACTTGATGGTCTGGATGGTAACGGTGATAGGTTATACTCTAGGAATCCCTGACGTCATCATGGGTATTACCTTCCTGGCTGCAGGGACAAGTGTACCGGACTGCATAGCCAGTTTAATAGTTGCTCGACAAGGTCTGGGTGACATGGCAGTCTCCAACACTATTGGGAGCAATGTGTTTGATATTCTGGTAGGCCTTGGGCTGCCATGGGGGATCCAGACCATGGCTGTGAATACTGGCTCAGTGGTTCAAATAAACAGCAAAGGCCTGGTGTATTCAGTGGTGCTTCTGTTAGGATCTGTTGCTCTAACTGTGTCTGGTATACATGTCAATAAGTGGAAACTGGACCTGAAGCTGGGAGTATACGTGCTCTTGCTGTACGCAGTTTTCCTGTGTTTCTCCATCATGATCGAATACAACGTTTTCACTTTTGTCAACCTCCCGATGTGTGAAGagagtatt

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000283 True 1254 mRNA 0.48 11 9688747 9705449

Neighbor

gene id symbol gene type direction distance location
AMCG00000280 NA coding upstream 128271 9557518 ~ 9560476 (+)
AMCG00000288 l2hgdh coding upstream 179823 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 187379 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 261205 9414677 ~ 9427542 (+)
AMCG00000278 NA coding upstream 276415 9378563 ~ 9412332 (+)
AMCG00000282 NA coding downstream 16441 9721890 ~ 9747008 (+)
AMCG00000293 NA coding downstream 122640 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 159538 9864987 ~ 9876944 (+)
AMCG00000292 NA coding downstream 205687 9911136 ~ 9920082 (+)
AMCG00000306 arg2 coding downstream 297272 10002721 ~ 10010111 (+)
G149253 NA non-coding upstream 403596 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 672596 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 1014961 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 1103780 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 1104740 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 14498 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 252264 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 267599 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 315973 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 324245 10029694 ~ 10030786 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 97659 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 142336 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 202058 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 1103474 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 1113623 8572936 ~ 8575124 (+)
G149424 NA other downstream 263875 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 829141 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2260106 11965555 ~ 11995026 (+)
G149859 NA other downstream 2974221 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 3261428 12966877 ~ 13030853 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_06865685_06903896 SLC24A4, SLC24A4B coding CI01000029 null 6865685 ~ 6903896 (+)