CI01000029_06865685_06903896 (SLC24A4, SLC24A4B)


Basic Information

Item Value
gene id CI01000029_06865685_06903896
gene name SLC24A4, SLC24A4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6865685 ~ 6903896 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_06865685_06903896.mRNA
ATGACCAGCGCGGATCAGGAGCAGCATCAGGACCGCACCATGACGACGGTCTCCAAGAAATCCATCATCGCCAAGATGTTCAAAGTGCGCAAGAGGAGGGAGATGCTGCTGGCGCAGGTGTGTTTGGTCTGCAGTGTTCTGTTCGTGGCGTGGGGCATGTCGACCATCCTGACCAGGACAGGTCATGGCATGATTGTGGAGGAGTCGCATATGGAATCACATGACCACTGGGGGCGACGGCTGATGTCATCAACACATGATAATGTGACGGAGGAGAAAAACTGCACGGAGCCAGCCATCCGTGAATTTCCAGATGATGTTTTCACCAATGCCGAACGGAAGAGCGGAGCTGTACTGCTACATATTATAGCGGCTCTCTACATGTTCCTGGCCCTGGCGATTGTGTGCGACGACTACTTTGTGATGTCTCTTGAGAAAATCTGTGAGAAGCTGAATCTGAGCGAGGATGTGGCTGGTGCCACGTTCATGGCGGCGGGGAGCTCAGCGCCCGAACTCTTCGCATCTGTTATAGGTGTCTTCATCACTCACGGTGATGTTGGAGTTGGAACTATCGTCGGTTCTGCCGTCTTCAATATCCTCTGCATCATAGGAGTTTGTGGGATCTTTGCCGGGCAGGTGGTCTTACTGACCTGGTGGGCTGTTTTCCGTGATTCTTTCTTCTACATATTGTCTGTAGTTGCTCTAATTGTGTTCATCTATGATGGAAAGATTGTGTGGTGGGAGAGTCTGGTGCTGGTGCTCATGTACGCTGTATATATCATCATCATGAAATTTAATTCCAGCTTGCAGAAGTTTTTCACAAGACGGAGCGACAAGAATGTTGCCAATGGAAACGCGGCGGCCGGCAGTGAACTGGAGGATGTCAAGTCCAGTAAGGTGTACAGTCGAGGTTCGGTGGTAATGGTTGATGAAATCATCAACGCCAGCCCTCCGAATTACCGTTTCCCTGAAGCGGGTCTCCGTGTCATGGTCACGAACCACTTTGGACCCAAGACTCGTCTGCGCATGGCCAGTCGCCTCATTATAACCGAGCGTCAGAGGTTGGTCCAGTCAGCCAATGGGGTGGAGACGGCTGTGGTGGACGGGAAGCCAGACATCGAGAATGGAAACTTGCCAGAAGACAAAACCAATGAGGAGAAAGAGAGTGAACTCACCTCACCATTCAGAGTACCAGGCGGCTGTGTGAACAGGACTAAATGGCTGATCTCTTGGCCGTTATTGTTGATCCTGTTCTTCACCATCCCAAACTGTGCAAAGTCTCGCTGGGAGAAGTTCTTCATGCTCTCATTCATCCTCTCCACCGTCTGGATTGCCGTCTTTTCCTACTTTATGGTGTGGATGGTGACGGTCATCGGATACACACTCGGCATTCCTGATGTCATCATGGGCATCACGTTCCTGGCCGCGGGCACGAGCGTCCCGGATTGTATCGCCAGTCTGATCGTGGCTCGTCAAGGTCTGGGAGACATGGCCGTGTCCAACACCATCGGCAGCAACGTGTTTGACATTCTGGTGGGGCTCGGCGTTCCCTGGGCGCTGCAGACCATGGCAGTCAGTTATGGATCAGTTGTGATGATAAACAGTCGGGGGCTCGTGTACTCAGTGGTGCTTCTGCTGGGCTCTGTCGCTCTCACCATTCTTGGGATCCACCTGAACGGGTGGAAGTTGGACTTTAAGCTGGGTGTTTATGTGCTGGTGCTGTACGCCATCTTCCTCTGTTTCTCCATCATGATCGAATACAACGTCTTCACCTTCGTCAATATTCCCATGTGTCGGGAAGAC

Function

symbol description
slc24a4b Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A5. Orthologous to human SLC24A4 (solute carrier family 24 member 4).
slc24a4 Enables calcium, potassium:sodium antiporter activity. Involved in calcium ion transmembrane transport; potassium ion transmembrane transport; and sodium ion transmembrane transport. Acts upstream of or within cellular calcium ion homeostasis. Part of plasma membrane. Implicated in amelogenesis imperfecta hypomaturation type 2A5.

GO:

id name namespace
GO:0030955 potassium ion binding molecular_function

KEGG:

id description
K13752 SLC24A4, NCKX4; solute carrier family 24 (sodium/potassium/calcium exchanger), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_06865685_06903896.mRNA True 1803 mRNA 0.52 17 6865685 6903896

Neighbor

gene id symbol gene type direction distance location
CI01000029_06834812_06849277 CPSF2 coding upstream 16167 6833577 ~ 6849518 (+)
CI01000029_06824397_06831521 CUNH14ORF169 coding upstream 33014 6823629 ~ 6832671 (+)
CI01000029_06775631_06791278 INTS9 coding upstream 74339 6775631 ~ 6791346 (+)
CI01000029_06724205_06734079 HMBOX1B, HMBOX1 coding upstream 130103 6724205 ~ 6735582 (+)
CI01000029_06494856_06495812 NA coding upstream 369838 6494391 ~ 6495847 (+)
CI01000029_06906861_06907157 NA coding downstream 1938 6905834 ~ 6908633 (+)
CI01000029_06923683_06924032 NA coding downstream 19332 6923228 ~ 6924085 (+)
CI01000029_07132444_07166752 FUT8B, FUT8 coding downstream 228548 7132444 ~ 7166930 (+)
CI01000029_07206718_07211765 NA coding downstream 301791 7205687 ~ 7212408 (+)
CI01000029_07214426_07214941 NA coding downstream 310530 7214426 ~ 7214989 (+)
G155274 NA non-coding upstream 12807 6852476 ~ 6852878 (+)
G155253 NA non-coding upstream 113907 6751287 ~ 6751778 (+)
G155249 NA non-coding upstream 118123 6744832 ~ 6747562 (+)
G155235 NA non-coding upstream 143128 6722344 ~ 6722557 (+)
G155248 NA non-coding upstream 143501 6721963 ~ 6722184 (+)
G155357 NA non-coding downstream 97543 7001439 ~ 7001888 (+)
G155367 NA non-coding downstream 107200 7011096 ~ 7011301 (+)
G155389 NA non-coding downstream 161809 7065705 ~ 7066055 (+)
G155391 NA non-coding downstream 170396 7074292 ~ 7074548 (+)
G155083 NA other upstream 375391 6431535 ~ 6490294 (+)
G155079 NA other upstream 577287 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 1395339 5461497 ~ 5470346 (+)
G154587 NA other upstream 1594150 5271020 ~ 5271535 (+)
G153790 NA other upstream 2125578 4733589 ~ 4740107 (+)
G155522 NA other downstream 730937 7634833 ~ 7637834 (+)
G155627 NA other downstream 1027584 7931480 ~ 7932177 (+)
G156007 NA other downstream 2060922 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000283 NA coding CM030141.1 CM030141.1 9688747 ~ 9705449 (+)