G155249


Basic Information

Item Value
gene id G155249
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6744832 ~ 6747562 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176276
TTCTTCTCATCTTTCTTGGATAACAGAGACTTGAACATCTTGGGTACTGGAGACACTAGAGCTTTTACTGGGGAGAAATAAGATGCAGCAAATCCTGAGAGACCTGCAGGGACACGGGTTTAAGGAGCGGAAGAAGAGAGAAAGATTGAAGGACAGAGGAAAAGCAGAGGAGAAAAGAGCAGGAAACCCATTTGAGCAAAAATAAGTGCAAAGCATAAATAAAGCATTAACAAAAACACAGAAGCAGATCAGCGCCTCCATCGGGAGCACAGCGGCTGAATTAAGCACATTACACTTAATGCTGTTTTTTCTGCTACTGTTTTACTTCATTCCTCTTTGACAGCATGCACCAAACTGCTCCAAACACAAACCTTTTTCTAAGCGCCATGCAGTGCTGAGTTCATGCATAGACCAGCAGATCAAAGACACTTATAATCAGTAAGAAATTTCAACAGCCACAGATCTTGAAACTAGGTTTAAGTTTCCTGAAGAAAAGTGGTGCTTGCTGACATGGTGCTAGAGTTGTAGCTGGTTACTAAGGCATTACTAAGGTGTTCTAACCCTGCGTCCGAAATCTTGTATTGTCTAAGTAGGTACTACATTTGAATTTACTTTGTGGCCATTAAACAAGTGTCATTGTTTATAGTATGAATATGGGTAGTATCAATGAAATTTGGACGTACTACATCCGCCATGTTGTTACTGTCATGTGACCTACCAGTGTCAGTTCACTTCACCTCCATTCATAAATCCTCTCCCGTGACCTCATGGGATAGTAAGGTGTCCATCGTATGCACACTTCAGAATCTCACCGGAAGTAGTAGGTCATCTGGGGACTTTTCGCCTACTATTTTTCGAATACTATGAATTCTGACATATTGCCCTTTTGGCATACAGTTTTTTTGCATAGTATATAGTAGGGAAGCATTCGATTTCGTACGCAGCGTAAATGTGTTTTTAATCATTTTGCTATGCAGTTGCTGTGGCATTATGAGTGGTTTCTAGAGCATTGCTAAGGTGTTTCATTAATGTTTTTAATTTTGTTGCTATAGTTTTTTGATGGTTGCTAGGGTGTTGCTAAAGTGTTTTAAGTTTTTTTTTATCATGTTGCTATAGTGTTTGGGATGGTTGCTAGGGTGTTGCTAAGTTGTTCTGACAGTTTTTTATGTTGCTATGATATTCTCAATGATTGCTAAGGTGTTTTATGTCTTTTGTTTCTATGGAGTTTTTTTTTTTTTGTTGCTATAGTTTTTTTATGGTTGCTAGGGTGTTGCTAAGATTTTTTTAAAAAAATTTTATCATGTTGCAAAAGCGTTTGGGATGGTTGCCATAGCATTGCTAAGGTGTTCTGAGTCTTTTTATGTTGCTATGTTCCAGATGGTTGCTAGGGAGTTGCTAAGCAACTCAGCATTTTTATCATGTTGCTATGGTGTTCTGGATGGTTGTTAGGGTGTTGCTAAGTTGTTCTGACAGTTTTTTTTCTTATGTTGCTATGGTGTTCTGGATGGTTGCTAGAGTGTTGCTGTGTGTCTTTATTATGTTGCTATGGTATGGTAACTCCATCAGGTAATGCAACCTCTGTCTCACCCTGTGAAGGTGGCAGACAGCAGAAGAGGAAGAGGACACTTACCTGGCTCTGAGTTTGGACTTTGTATTGATGGTGAGTGAGATGGGGATGATGTTGGCACATTAATTTCCTGCTGACTGTCCCAAACACCTTTGTAGTCTTGGCTGGTGGACAGATCTTTTCTGCTGCCAGAGAGCCGGTGTACATTGGGTGAACTGAGGCAGCGTTTGGGAATCCTTCCTTTATCTGTCAGATGTTCCCTTACTGAAACCTCCTGTCTGAGACGGTCAAGCGTGAGGATGTTCTCCACGGCTAACACACTCCGCAGGTATTTCTCAATGGCGGCTTCACTGTCAGTTCCTAGGTTGTCAGTGCTGGTGGCCAGTCGGGCGAGCATCTCCCTGTCCTCAGAGCCCTGCATGTCCTGTGAACAAATGCACACAGCCATTTCTGTTACCAGCCTCACATAGACTTATGTACAGTATCGTTCAAAAGTTTGGGTCAGAAATGAATACTTTTATTCATCAAGGATGCATTAAACAGATCAAAAGTGACAGTAAAGACATTTATAATTTTATAAAAGATTTCGATTTCAAATAAATGGTTCTTCTGAACTTTCTGTTCATCAAAAAAATCCTGGAAAAGTATCATACCCATGTATCACCTTTAGTGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176276 True 2243 lncRNA 0.40 5 6744832 6747562

Neighbor

gene id symbol gene type direction distance location
CI01000029_06724205_06734079 HMBOX1B, HMBOX1 coding upstream 9250 6724205 ~ 6735582 (+)
CI01000029_06494856_06495812 NA coding upstream 248985 6494391 ~ 6495847 (+)
CI01000029_06453008_06476863 NA coding upstream 267742 6453008 ~ 6477090 (+)
CI01000029_06443365_06447942 CRNKL1 coding upstream 296890 6443365 ~ 6447942 (+)
CI01000029_06347167_06348123 NA coding upstream 396663 6346660 ~ 6348169 (+)
CI01000029_06775631_06791278 INTS9 coding downstream 28069 6775631 ~ 6791346 (+)
CI01000029_06824397_06831521 CUNH14ORF169 coding downstream 76067 6823629 ~ 6832671 (+)
CI01000029_06834812_06849277 CPSF2 coding downstream 86015 6833577 ~ 6849518 (+)
CI01000029_06865685_06903896 SLC24A4, SLC24A4B coding downstream 118123 6865685 ~ 6903896 (+)
CI01000029_06906861_06907157 NA coding downstream 158272 6905834 ~ 6908633 (+)
G155235 NA non-coding upstream 22275 6722344 ~ 6722557 (+)
G155248 NA non-coding upstream 22648 6721963 ~ 6722184 (+)
G155236 NA non-coding upstream 54895 6689281 ~ 6689937 (+)
G155218 NA non-coding upstream 55754 6688755 ~ 6689078 (+)
G155194 NA non-coding upstream 63864 6672937 ~ 6680968 (+)
G155253 NA non-coding downstream 3725 6751287 ~ 6751778 (+)
G155274 NA non-coding downstream 104914 6852476 ~ 6852878 (+)
G155357 NA non-coding downstream 253877 7001439 ~ 7001888 (+)
G155367 NA non-coding downstream 263534 7011096 ~ 7011301 (+)
G155083 NA other upstream 254538 6431535 ~ 6490294 (+)
G155079 NA other upstream 456434 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 1274486 5461497 ~ 5470346 (+)
G154587 NA other upstream 1473297 5271020 ~ 5271535 (+)
G153790 NA other upstream 2004725 4733589 ~ 4740107 (+)
G155522 NA other downstream 887271 7634833 ~ 7637834 (+)
G155627 NA other downstream 1183918 7931480 ~ 7932177 (+)
G156007 NA other downstream 2217256 8964818 ~ 9064541 (+)

Expression


Co-expression Network