AMCG00000344 (LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514)


Basic Information

Item Value
gene id AMCG00000344
gene name LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12344867 ~ 12345699 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000344
GAACAGAGTATCTGCCAGGCTCGGGCCTCTGTGATGGTCTATGATGATACCAGCAAGAAATGGGTGCCAATCAAGCCTGGCCAGCAGGGCTTCAGCCGAATCAACATCTACCACAACACTGCCAACAACACCTTCCGTGTGGTGGGCGTCAAACTCCAGGACCAGCAGGTGGTCATTAATTATTCAATAGTGAAGGGACTGAAGTACAACCAGGCCACCCCCACCTTCCACCAGTGGCGTGATGCCAGGCAGGTGTACGGGCTGAACTTTGCCAGCAAGGAGGAGGCCACCACCTTCTCCAACGCCATGCTCTTCGCTCTCAATGTGCTGAGCTCCCAGGACGCGGGTGAGTTGCCCCCACGGCCTCTCCCATAG

Function

NR:

description
PREDICTED: ena/VASP-like protein isoform X3

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0046907 intracellular transport biological_process
GO:0051289 protein homotetramerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K23487 EVL; Ena/VASP-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000344 True 375 mRNA 0.57 2 12344867 12345699

Neighbor

gene id symbol gene type direction distance location
AMCG00000347 NA coding upstream 59037 12254428 ~ 12285830 (+)
AMCG00000346 NA coding upstream 136735 12202170 ~ 12208132 (+)
AMCG00000340 rpusd2 coding upstream 175406 12161991 ~ 12169461 (+)
AMCG00000339 NA coding upstream 253974 12076056 ~ 12090893 (+)
AMCG00000351 ivd,LOC107719458 coding upstream 302944 12034131 ~ 12041923 (+)
AMCG00000345 NA coding downstream 11142 12356841 ~ 12364023 (+)
AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding downstream 39709 12385408 ~ 12399523 (+)
AMCG00000358 NA coding downstream 73080 12418779 ~ 12422714 (+)
AMCG00000359 NA coding downstream 84359 12430058 ~ 12459938 (+)
AMCG00000365 NA coding downstream 227272 12572971 ~ 12579239 (+)
G149747 NA non-coding upstream 246495 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 317424 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 544127 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 544989 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 546860 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 487840 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1067166 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1303704 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1394077 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2119193 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 349841 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1809730 10534590 ~ 10535137 (+)
G149424 NA other upstream 2374066 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2753779 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2798456 9514822 ~ 9546411 (+)
G149859 NA other downstream 333971 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 621178 12966877 ~ 13030853 (+)
G150069 NA other downstream 1345140 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1787439 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2586079 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_09224569_09226329 NA coding CI01000029 null 9224290 ~ 9226329 (-)