AMCG00000345


Basic Information

Item Value
gene id AMCG00000345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12356841 ~ 12364023 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000345
gcaGATGatggagcagcagcagctccaggcGCAGATAGAGAGGGATCGAAGGGCATCCACCTCAGTTTCCACCCTTCAGATCAAAGtgtcctcctccccctctcagTCTCACTCCCCCCCTCCTGAGTACAGTCACTGTCGAGCTGGGGCCGTGCCGCCCCCGTCCTATGCCAAGGtcacctcctccccctcctctacCTCCTCCTCCCGGGATGGAGAGGGGGGCAGCGTCTCCTTCCAGACAGACAGCACGTGTGACTCCCCTCAGAAGAAAGTCCCTGTAGCCTCCCAGCTCTCCACCTCCCTTGCCTCTGCTTTCTCCCCAGTGCAGCCCGGGGTCGGCACCCTCCCCCGAAACATCCGACAGATCCCGCTTTCCCCCCCGCTGCCCTCCTCACATGCTCCTGTGCTGCCCCCCAAGCCCGGAGCCTGGCCCTCCCCAAACATGTTCTCTCCTCTGTCCCCCTCGCCCCCAGTGGTGATGACTCTGGCCCCCATGAAGCAGGTCTGCCCCCAGCCTGTGCTCCCAGTTGCCCTTCCTCTTCTTTCCCTTCATAACGGGCGGGTCAAAGGTCACACTGATCTTTCAGCCCACCAGCAGGGGGTGGAGCCTTCCAACGGCCACCTGGAGGATTATTTCAGCCACCAGCAGCAGCCACTCTACCCACCCAGCTCCGCTTCCCACCCCGCCCTCTTCAAAAACCAAGATGGCTTATTCGCTCCCTGTTGCGAGCCAGTTCCCCTGCCTGCCCTGATTGGCCATCCCATTCACAGTCCCGCTCACCACCCGCAGTTCTCCTCTGTTATGCTGCAACAGCAGCTGTACCAGGCCAACCCCCTTTTCGGCTCTTTACCCCCCTCTTACACTGCTCTATCCGAGGGGGCCCCGCCCAAGAAgaccccccctcctccttctcaGGCTGCTGTGCCCCACTCCAGTCCGCCCATCCCTCCGGGACACCCCTCTGCGTTCTCCGTGGCCCCCCCGGCTCCAGCTTCGGTTCCGGCTCCAGCCCCGGTCTCAGTCGGGGGCCCCCCTCCCCCGCCGCCTCCTCCTggaccccctcccccctctaccggggcccccccgcccccccctccGCTGCCGGCTGGTGGAGGGCCGGGGGGGCCGGGCGAGGAGAGCCCAGGGGCGGGGCTGGCAGCGGCATTGGCTGGAGCCAAACTGCGTAAAGTGCAACGGTCTGAAGAAGGGTCGGGGGGCACCAGCCCTAGTGGTGCAGCAAAGAATGATGCCAACCGGACGAGTGGTGGAGGGGGGCTGATGCAGGAAATGAATGCCCTGCTCGCACGAAGAAGGAAAGCagcaacacagacagaaaaatcTGGTGACAAGAAGGAAGAAGAAAGCCAGAATgAGGATAACAGCCTGTCTCCGTCTCCTGTGACCCGTGGTCCCGGACAGCAGAACTCCACAGATCCTCTGAAGAAGCCATGGGATCGGGCCAATTCTGCGGACAAGTCTTCATTGGTATCAAGGGTGAAACCAGTCGGCAGCAGCAACGACATGCCCACAGACGCCTTAGATTTTGACAGAATGAAGCAGGAGATACTGGAGGAGGTTGTACGTGAATTGCACAAAGTGAAGGATGAGATAATTGATGcCATTAGACAAGAACTTAGTAGAATTAGTACAACATAATATCTCTGACAGTGTGTAAGACAGTAGGACGTGTGAAGGGTTCTGAGGgaaggagagcgagagaagtggaggaagagaggaagagaggagccACAAGGAaaggaagagaagaagagaCCAGAAGACACTCGCACTgatttgtctgtattcagatttttttttctctgtacatTTAGACTCAACCCAGTTTGCAGCTTGCTGCTTTCAGTCTGCATAATGTTAAGTCTTAAATAAGTTTAAAAGAAATTGAAGTTAAGAACTtgttttctagattttttttgttttactttttgtttattagcactattattattattattacattataatatattatttttcaaacagaCGTTGCACACCATTGTATGTCagccttttatattttatatatatttttttttctttggttgttgaaaatacaattctaaGCACATACACGGTTTGCTTTATAGTTACATGACCTCagcataattatttttattttaaagagttttTTATCCTTTGCCAACACAGATGTATGAAatcactggaaaaataaaaaccgaaaaaaaaagtttgaaccTGAGCTAGTTGTGGAAGAATAGATACAGTTGCTCTTTGAATATTGCAACCTTATAAACGATACATCAATACACCAGAGTATTTGTGATCATgttgttaataaaatgtttattggcTGCAAGGATTTGGTGAAGTATTGTTcgttttatttccctttttgacCAAGTGCTTcctggttttaaaaaaaagaaaaaagacaaaaaaagaaaagaaaatccactgagttttaaatccatttaaataaaactgt

Function

GO: NA

KEGG:

id description
ko04911 Insulin secretion
ko04727 GABAergic synapse
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000345 True 2471 mRNA 0.52 10 12356841 12364023

Neighbor

gene id symbol gene type direction distance location
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding upstream 11142 12344867 ~ 12345699 (+)
AMCG00000347 NA coding upstream 71011 12254428 ~ 12285830 (+)
AMCG00000346 NA coding upstream 148709 12202170 ~ 12208132 (+)
AMCG00000340 rpusd2 coding upstream 187380 12161991 ~ 12169461 (+)
AMCG00000339 NA coding upstream 265948 12076056 ~ 12090893 (+)
AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding downstream 21385 12385408 ~ 12399523 (+)
AMCG00000358 NA coding downstream 54756 12418779 ~ 12422714 (+)
AMCG00000359 NA coding downstream 66035 12430058 ~ 12459938 (+)
AMCG00000365 NA coding downstream 208948 12572971 ~ 12579239 (+)
AMCG00000366 NA coding downstream 344756 12708779 ~ 12709438 (+)
G149747 NA non-coding upstream 258469 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 329398 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 556101 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 556963 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 558834 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 469516 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1048842 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1285380 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1375753 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2100869 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 361815 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1821704 10534590 ~ 10535137 (+)
G149424 NA other upstream 2386040 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2765753 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2810430 9514822 ~ 9546411 (+)
G149859 NA other downstream 315647 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 602854 12966877 ~ 13030853 (+)
G150069 NA other downstream 1326816 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1769115 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2567755 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_09218366_09222084 NA coding CI01000029 null 9217814 ~ 9222084 (-)
eurasian perch (Perca fluviatilis) G184306 NA non-coding NC_053129.1 CM020926.1 14491099 ~ 14493568 (-)