AMCG00000350 (tmem121a,tmem121,LOC107594772,LOC107377718,LOC107674105)


Basic Information

Item Value
gene id AMCG00000350
gene name tmem121a,tmem121,LOC107594772,LOC107377718,LOC107674105
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11570345 ~ 11571229 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000350
ATGACCAGCATGGCCTTTATGGATGCCTACCTTGTGGAGCAGAACCAGGGGCCCCGGAAGATAGGGGTGTGTATCATCGTTCTGGTAGGGGACATCTGCTTCCTAATCGTGCTGCGCTACGTAGCTGTCTGGGTTGGAGCCGAAGTAAAGACTGCTAAGAGGGGATACGCCATGATCCTCTGGTTTCTATACATCTTCGTCCTGGAGATCAAGCTGTACTTCATCTTTCAGAACTACAAAGCAGACAAGCGCAATTTGGAAACAGTTGCCCGTAAAGCCTTGACGCTTTTGCTTTCTATATGCGTGCCTGGGCTCTACCTGATTCTGGTGGCTCTGGACAGCATGGAGTATATAAGAACTTTCCGGAAGAAGGAGGACCTTCGAGGGCGCCTCTTTTGGGTGGCTTTGGATCTCTTGGATATCTTAGACATTCAAGCCAACTTGTGGGAGCCCCATAAAACGGGGCTTCCCATCTGGGCCGAGGGGCTCATGTTTTTCTACTGCTACATCCTTTTGCTGATCCTaccctgtgtgtctctcagtgagATCAGCATGCAGGGAGAGCACATCTCCCCACAGAAAATGATGCTCTACCCAGTACTGAGCTTGGTTACCATCAACATTGTCACCATCTTCATTAGGGCCGTCAACATGGTCTTGTTCCAAGATAGCCGCGTCTCCACCATCTTCATTGGCAAGAACATTGTGGCCATTGCCACCAAGGCCTGCACTTTCCTCGAGTACAAGAGGCAGGTGAAGGAGTTCCCCCAGAACGCCATCGCTCTGGAGCTGCAGCAGAACTCTATCTCCCACAACCAGACCCTCCCCAACACAACTGGCGTGCCCCACGAACAGTCGCCCACCCGTGAAATTGTGGACACATGA

Function

symbol description
tmem121 Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 121-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000350 True 885 mRNA 0.52 1 11570345 11571229

Neighbor

gene id symbol gene type direction distance location
AMCG00000315 NA coding upstream 337330 11221715 ~ 11233015 (+)
AMCG00000313 NA coding upstream 400403 11147655 ~ 11169942 (+)
AMCG00000314 dnal1 coding upstream 438666 11127858 ~ 11131679 (+)
AMCG00000304 NA coding upstream 1019431 10549932 ~ 10550914 (+)
AMCG00000305 NA coding upstream 1021146 10548830 ~ 10549199 (+)
AMCG00000327 NA coding downstream 100978 11672207 ~ 11674687 (+)
AMCG00000325 NA coding downstream 105924 11677153 ~ 11679698 (+)
AMCG00000326 NA coding downstream 114325 11685554 ~ 11688479 (+)
AMCG00000323 NA coding downstream 133366 11704595 ~ 11714618 (+)
AMCG00000324 jmjd7 coding downstream 161167 11732396 ~ 11734499 (+)
G149602 NA non-coding upstream 132526 11437369 ~ 11437819 (+)
G149595 NA non-coding upstream 202120 11338391 ~ 11368225 (+)
G149591 NA non-coding upstream 243794 11326186 ~ 11326551 (+)
G149587 NA non-coding upstream 347238 11222829 ~ 11223107 (+)
G149572 NA non-coding upstream 394279 11175662 ~ 11176066 (+)
G149666 NA non-coding downstream 215864 11787093 ~ 11791091 (+)
G149667 NA non-coding downstream 220642 11791871 ~ 11792096 (+)
G149668 NA non-coding downstream 222138 11793367 ~ 11794856 (+)
G149672 NA non-coding downstream 226146 11797375 ~ 11798007 (+)
G149673 NA non-coding downstream 228332 11799561 ~ 11799878 (+)
G149525 LOC100846954,LOC107575789 other upstream 1035208 10534590 ~ 10535137 (+)
G149424 NA other upstream 1599544 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 1979257 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2023934 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 2083656 9440061 ~ 9486689 (+)
AMCG00000352 NA other downstream 394326 11965555 ~ 11995026 (+)
G149859 NA other downstream 1108441 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 1395648 12966877 ~ 13030853 (+)
G150069 NA other downstream 2119610 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2561909 14133138 ~ 14153840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_03422781_03423731 TMEM121A, TMEM121B, TMEM121 coding CI01000062 null 3421906 ~ 3424749 (+)