AMCG00000368 (wdr20,LOC106610634,LOC101173269)


Basic Information

Item Value
gene id AMCG00000368
gene name wdr20,LOC106610634,LOC101173269
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12878438 ~ 12884325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000368
GCTGCTGATTTAAGTAAACCTATAGACAAGAGGATATACAAGGGAACACAGCCCACCTGTCATGACTTCAACCACCTGACTGCCACGGCAGACAGCGTCTCCCTGCTGGTGGGGTTCTCCGCAGGCCAGGTGCAGCTCATAGACCCCATCAAGAAAGAAACTAGCAAGCTGTTTAATGAAGAAAGGCTAATAGACAAGTCTCGGGTCACCTGTGTGAAATGGGTTCCCGGGTCCGAGAGCCTTTTCCTCGTAGCTCATTCCAGTGGCAATATGTACTTGTATAATGTGGAACACACTTGTGGAACCACAGCCCCACACTACCAGATGCTGAAACAGGGTGAAAACTACGCTGTGCACACTTGCAAGAGCAAATCCACAAGGAACCCCTTGTTAAAATGGACGGTGGGAGAGGGGGCACTCAACGAGTTTGCCTTCTCCCCAGATGGGAAATTCCTCGCTTGTGTCAGTCAGGACGGCTTCCTCCGGGTTTTTAATTTCGACTCGGTGGAGCTGCACGGGACAATGAAAAGCTACTTTGGGGGGTTGCTGTGTGTCTGCTGGAGTCCGGATGGCAAGTACATTGTCACCGGCGGAGAAGACGACCTGGTGACCGTGTGGTCTTTTTTAGATTGCAGGGTAATAGCAAGAGGCCACGGACATAAATCTTGGGTGAGTGTGGTGGCCTTTGACCCTTACACTACGAGCGTGGAGGAGAGCGACCCAATGGAGTTCAGCGGGAGTGATGAGGACTTCCAAGACCAGATCCACTTTGGTCGGGACAGGGCGAACAGTACGCAGTCCCGGTTGTCCAAAAGGAACTCCACCGACAGCCGCCCAGTCAGCGTCACGTACCGGTTCGGTTCCGTTGGACAGGACACTCAGCTGTGTTTATGGGACCTGACAGAAGACATACTgttcccccacctccccctttCCCGTACAAGAACGCATACGAACGTCATGAACGCCACCAGCCCCCCCACGGGCAGTGGTGCGATCAACCCGGGCAGCAACGGGAACAACAGCATAAGCAGCATCCCGGGCAACTCCTTACCCACTCAGCTTCCTCGATCCAACAGCCTTCCGCACTCGGCGGCCGCCACCACCAACAGCAAGAGCAGCGTCGTGGACAGCGCCATCGCGTCGGGTGTGAGCAAGTTCGCCACACTCTCATTGCACGACCGCAAGGAGCGGCACCACGAGAAGGATCACAAAAGGAACCACAGCATGGGACACATCACCAGCAAAAGCAGCGACAAGCTGAACCTGGTCACGAAAACTAAAATGGACCCCGCAAAGACTTTGGGAACCAATCTCTGTCCTCGGATGGAAGATGTTCCCTTGTTAGAGCCTCTTATCTGTAAAAAGATAGCACATGAAAGACTCACTGTCTTGATATTTCTCGAGGACTGTATAGTAACTGCCTGTCAGGAGGGATTTATTTGCACATGGGCGAGGCCTGGCAAAGTGgGTTTATTGTCATCCCAAAACCAAGCCAACTCTCCCAGTGGGACTGTAGTATAGCCATCATAATTCTGCTGCTAAGAAATCTTCATCACAGAGACGTAATGACGCCAGAGCCAGACGCTGTTCTTCATCCGCACAGCattgcaagttttttttgttttgtttcaatttgttttgtttttcctgaaatGGCCTAGCGTGAGGTAGTGGTCTGCAAGCTCAAATGGAAAGGGTGAGGTGCAATTTTGGACGAATTTTGGTAAAATCGTCCTTGAAATTAAACCctgcaggatttatttattctcgCCCACTCTCCCCGGCCTCTTCtacttttacacacacaaacacacacacacctgccccCCATGTATGTTTTTACTACACTTTTCCACTGGAGTCGCGGTACAGAGCTTGAGAAAATCAGAAGCAAATTGATCAGCCGATTCCTCAAGTCTGTGTTTCCGCCATCTCCAGTTGTGTTGTCATTGTATCCCatttataatgcaaaaataattaaatggaagagaaaggaaaacCAATGCTTCCCTAAAGATATatccctgtattttttttttttcttttaacttaaATTAGTATCTCACCATTGAATACTTTGCActgattattttctgttttattatataactATATTGGATGAAAAAAAATTTTTGAAGACAGCCTTGATGCACTTGGGGTATGGCAAGTCATTATCTTCTGGcttgaaatgttgaaatggaAAGCTGGATTCTgcaatcagttttttttttttttatggaaaaagaaaaataatttgtttgcaCTTAATAGTTTGTTAGAAGAGAATGGCTTTACAATTTGGGGTGTGCGAGGACTCCCAGACAGCTATATAAggtgaagaaaatattaaaaaatgaaacctttgTATCTAttgagcatttattttaatattgtttcaaattacaATCGGCTctgtattatatgtataaatattgtaattcagTGATTGATGGGGCAAAAATTGATCATTACACTAGTGGAAGTTCATCTTCATTAAAGCAAAATAGTGATATTTCTAATGCagaaaaattatacatattaataatattaaaacaatcttgaatatgcaggtttttgttttcttttctgttgtacaaaaaaaaagatcattcagatgtatttttcttaattaaatgtttggtaTAGGAGAACTCTTTGTATCCAATGCTATTATGTCCAGGAAGAAGCTGAAATGCTTACTTgttacaaatttacaaaatgtacagaagtAGGGCAGAGTAACCGTCAAACTCAGCAATTATTTGAAGCTCAGGAAGTCAGCCGACTAAAATAAAAGATCAGAAATGCTATTCTATGTAAAGTTTAGTAGCATCCACTAGGAACAACTAGGTTCAGGGTTCAGCAGGATCCCTCTCCGTGTGACACTattaaaacagacttttaatgTACTTACCTTTTGTGCTTTCCAATCTTTCATGTCAATGGCCACTTTGAATTACTGCACACTACAAGGACATGGCCAGCCCAGCAAAGTGGTTTTACCagttttacatttcactttttctttcttcattaaaaaaatatggttTACAAGGAGCCTGGTGCTTGTACAGTTACTTAAGTTGTCTTTCTGCCGTTATAACTGACAATGGGTGCATATTCATCTGAATCTGAACATTAA

Function

symbol description
wdr20 Predicted to be located in nucleoplasm.

NR:

description
PREDICTED: WD repeat-containing protein 20

GO: NA

KEGG:

id description
K24741 WDR20; WD repeat-containing protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000368 True 3145 mRNA 0.44 3 12878438 12884325

Neighbor

gene id symbol gene type direction distance location
AMCG00000376 dync1h1 coding upstream 53480 12790380 ~ 12824958 (+)
AMCG00000377 NA coding upstream 94202 12764272 ~ 12784236 (+)
AMCG00000380 NA coding upstream 128074 12737655 ~ 12750364 (+)
AMCG00000366 NA coding upstream 169000 12708779 ~ 12709438 (+)
AMCG00000365 NA coding upstream 299199 12572971 ~ 12579239 (+)
AMCG00000369 nemf,LOC102775640 coding downstream 13817 12898142 ~ 12920131 (+)
AMCG00000370 NA coding downstream 48286 12932611 ~ 12942366 (+)
AMCG00000367 NA coding downstream 58731 12943056 ~ 12948495 (+)
AMCG00000384 mamdc1,mdga2 coding downstream 443067 13327392 ~ 13338022 (+)
AMCG00000385 NA coding downstream 468007 13352332 ~ 13409859 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 36765 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 780066 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 850995 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 1077698 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 1078560 11799561 ~ 11799878 (+)
G150042 NA non-coding downstream 528540 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 765078 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 855451 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 1580567 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 1848907 14733232 ~ 14733440 (+)
G149859 NA other upstream 150535 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 883412 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 2343301 10534590 ~ 10535137 (+)
G149424 NA other upstream 2907637 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 3287350 9561557 ~ 9591088 (+)
AMCG00000381 NA other downstream 82552 12966877 ~ 13030853 (+)
G150069 NA other downstream 806514 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1248813 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2047453 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 3927128 16811453 ~ 16814365 (+)

Expression


Co-expression Network