AMCG00000412 (pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025)


Basic Information

Item Value
gene id AMCG00000412
gene name pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14133138 ~ 14153840 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000412
ATGCTGTTCCGGGAGGTGTGGGGCCGCAGTTTTTGCCGCACCATTGAGAAGCTGGTGGAGGTGGTGCAGGAGTACCCCAGCGAGGTGGAGCACATCTTCAGCCCCGCCTGCGTGCCGCTGTGGCGCTGCGCCGGCTGCTGCGGGGACGAGAACCTGGAGTGCTACCCTGCCCAGACCTACAACGTCACCATGCAGctCTTGAAGATCAAGCCCGTGGAGGACCGAGAGTATGTTGAAATGACTTTTGTTGAGCATCAGACATGTGAATGTAGGAAGAGACAGAGGAAGGGAAGGAAAAGGAAGGATAAACAGAAAGCAAAAGTCTGCGACACGTAA
>TU189044
AGACCGGTCTTCTTGCACCAGCTTTCCCACCCAGGACCATTCAAAcccatcagtgtgtgtgtggacccTGCCAAAGACGGACGGGTCCGCTTGCGTGCATTAAAGGGACTGCAGGGCTGCATCTCTGTGAGGATCAATTACAGACATTtgctaaaaagaaagaaaggaaaagaaagtgtGTTCAAGACAACGGAAGATATTATTAGAccgttttggttttttttttttgctgctttttttgGAGGACAAACTGCTCCCAGAGTGGCACCCAAAAGGACGGACTTTGCCGGTTTCTACTGGAACTTTTCATAATTGTCATATCGGGTTACAGCAgctgtttcttttatttcatcCAGATGATTGTTTGATGCCATCAGACCCCCGATCCGGCCGGTGCCAATGAAACGCAGCTCCCGGGGGGGTGTCGGCTGTCCTTCTTCAGGTTGACTGTGCCCGAGCAGCAGGACGTGCCGATGCGCACTTTGCACGACTGAGACATTTGCGTTTCTTTTGCGTCAGGGCTCGCTTTGAAGATCCGTGTCGGTCTCTCCTCCGCACATGTGCCTTTCGTACCGGAATTGATGCGCTTTAGTCCGATTCGCCGGCTGGAAACTGGATGCGGCAATCGACATGAAATTTTTGGCCAACATCACCCAGATCATCGCCGCCCTGCTCCTGCACTTCTCACCTGCTCAGaCGTCGGCGTCATCCAGTGGAAACAATACCTCTGGAGTGATGCTGTTCCGGGAGGTGTGGGGCCGCAGTTTTTGCCGCACCATTGAGAAGCTGGTGGAGGTGGTGCAGGAGTACCCCAGCGAGGTGGAGCACATCTTCAGCCCCGCCTGCGTGCCGCTGTGGCGCTGCGCCGGCTGCTGCGGGGACGAGAACCTGGAGTGCTACCCTGCCCAGACCTACAACGTCACCATGCAGctCTTGAAGATCAAGCCCGTGGAGGACCGAGAGTATGTTGAAATGACTTTTGTTGAGCATCAGACATGTGAATGTAGAGAAAGGAAggttgttttacaaaaagcaagGAAGAGACAGAGGAAGGGAAGGAAAAGGAAGGATAAACAGAAAGCAAAAGTCTGCGACACGTGCCAGCCCCCTCGCAGGTAACTGAAGTGCAGCTCCTGGctccttttatttattccttttctgGTCAGAGTTAACAACGTTGGCAGTCTTCTAAGCACTTTCTATCGGATATTGCGTACTTCATCTGGGCTTGAGTGACGGGGACTGGGCTCCCGCGGGAGTGAGACGGCCGGAGCCGGTCTGCCATCCGGAGACAGCCACGGCTCGTCCCCTCAAGTGGCCGGTCCGGACAGGCGTGCGGAGCGGGATGGCTGTGAAGGACCAAGCTCAACGTTTAAAGACTAATCGCATCAGGGAGGACGGAGATCTCtcgatttttatttgtttcatttctttctAAAACACTTAAAGTATTTATTACTAAGAATAGAGGCAATAGTCATCAATAACAGGAACTTTGCTATTTTAAACCATGTGCTGTACAGAGCCTTTCCCTGGACTGAAACACATCacaaatggagagagagagagaccttgAGGACTGCAAGAATCATACCACTCGTTAAGAGGAGGTTTATACACGTGTAACTGCTGATAAATTATGCTATTAACGTGTCTGAATGGAGGTGTGGAGTGCTTGTGAAGGAGTAAAGGGTGTCATCTCAGCATCTCAAAGAAAAGGCTATGTAAAATCCACCTGAATAAATGATACAGGACTACTGTATGATCATGTATTCAATTGATCTAAATCGGCACAAAGTACAAACTCCTTAACTGAATTATTTCTCGTATTATTTTTGCAGTAGGTGGCAGTCTCCCTCTAGGGGTCGATGTTGAGTACTGCAAATAATGGTGAATCCCAGACTCGACCTCTTGGGCAATTCCTTACAGTTGATCACATCCTGGTGCAAATATGACCTATTTATCTATTTCTctggtgttgtgtttgtttgtcataaTCTCATATGCTCATGAGCTACTTCTAATATTCAACTGAGAGGTGCCACTGACAATTCAGAAGATTGTTTTTCTCCCGTGAGGCAGAATTGGAAGATATAATCATGAGATAAGTGTTACCTAACTCTACCTTCATGTGCACCTGTGATCCTAAGGGGAAGTCGCGGCACCACAATACAGTCAACCACCGAAAAGAACAGGACTACATGTCAGGATGAAGAAATACTCACTTGAAAATCAGGATTTATTAATTAGGCAATGAAATACCGTGGCGTTATCATGAGCTGTCCCTATGTACTGCCAGGCAATTAGACTTGAAGAGCCCTTTCAACagttatcattaaaataatggtATTCCAAGCATAAAAAACAGGATTGAAGAGAAGTGTAACAGGCTGTGAATGGAGAGGGACCCTATGATAATGAACAGTTCCATCAcattcctgttgttgtttttttacccaTGCCCTAAATGGTTTTGAAGATGGTTCTCAACTTTGATTCATTTCAATTCCCTTCCATCTGAAATGTCTTCACTTCCGAAACAATTCCCCTCAGGTAGGTGACTGGTGAAGTGGGCGACCAGAGACGCACCACTTCTGATAAGGAGATAATTGAGGTCATCTGTGTTCTGTCCTAAGCTCATTATGTCCCAGCAGTGTGTTTAGACTTTAAGGGACCTATATGGGGCAAAAATGTCTACATTATTCATCACTCATTTTGTGACTCGCCTTGCTCCACTTAGGCTATTTACATTCTAAAAACATGAACCAAAAACTGGtattatttaactgtatatttgctTTCTCATTATTATTCGGGAAAGCAAATCCCTCCATCAATCGTCTATTTCTATCCTATTTATTCTGGGGGAATGTAGTTCACAGTGGACTCTCAAAGATGGTCAAATCTCGAAGTCTTATACATCAACACGCCAAATAAACCTCTCTGTATGAAATAGAGCGGTATCGTTATGTTGCTgaacagatgcccttatccagagcaacttacaattgttacaatattaatTACCCATTAACTTAGCTGGGTTactttactggagcaatccaggTAAAGTGTCTCGCTCaagggaacagcagcagtgtcccacATCCCATccgctccagagtccagagccctgaccgctACTCCTAACCACTACACGCATATTGAAACATACATAACCACTTTGCATAGGACATCAGTGTTTTCTCATAACTTTATAATGGATGTTATCGGAAAGGaatttttgttgtaaataaaaaacatttcaggaaaGGTCTGTAAGTCTGTGTTGataatgtatattgtgtatatttatatattatatatatatatataaatgtattactgtt

Function

symbol description
pgf Enables growth factor activity. Involved in positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in several diseases, including brain ischemia; diabetic neuropathy; glioblastoma; myocardial infarction; and pancreatic endocrine carcinoma. Biomarker of several diseases, including artery disease (multiple); autoimmune disease of musculoskeletal system (multiple); epilepsy (multiple); limited scleroderma; and pancreatic endocrine carcinoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000412 False 336 mRNA 0.56 3 14149886 14151172
TU189044 True 3350 TUCP 0.45 7 14133138 14153840

Neighbor

gene id symbol gene type direction distance location
AMCG00000410 actr10,LOC106571574,LOC106608088 coding upstream 29241 14096501 ~ 14103897 (+)
AMCG00000406 naa30 coding upstream 86368 14037644 ~ 14046770 (+)
AMCG00000407 NA coding upstream 99255 14029182 ~ 14033883 (+)
AMCG00000392 NA coding upstream 223206 13882218 ~ 13909932 (+)
AMCG00000402 peli2,LOC105026454,LOC106594164 coding upstream 262937 13856638 ~ 13870201 (+)
AMCG00000411 NA coding downstream 3196 14157036 ~ 14159090 (+)
AMCG00000422 tmem63c,LOC107732232,LOC106611026 coding downstream 26996 14180836 ~ 14204787 (+)
AMCG00000424 NA coding downstream 70324 14224164 ~ 14228809 (+)
AMCG00000423 NA coding downstream 81400 14235240 ~ 14245576 (+)
AMCG00000421 aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234 coding downstream 107569 14261409 ~ 14282672 (+)
G150106 NA non-coding upstream 387022 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 483087 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 720074 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1291465 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 2034766 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 311052 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 579392 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 970870 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 983866 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1000795 15154635 ~ 15155084 (+)
G150069 NA other upstream 440549 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1102285 12966877 ~ 13030853 (+)
G149859 NA other upstream 1405235 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2138112 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3598001 10534590 ~ 10535137 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 777938 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2657613 16811453 ~ 16814365 (+)
G150750 NA other downstream 2782153 16935993 ~ 16938282 (+)
G150811 NA other downstream 3391614 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3594670 17748510 ~ 17759582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) pgfb pgf,LOC104960941 misc NC_053131.1 CM020928.1 20772125 ~ 20787186 (+)
striped catfish (Pangasianodon hypophthalmus) G234160 NA non-coding NC_047609.1 CM018555.1 2977471 ~ 2978470 (-)
mexican tetra (Astyanax mexicanus) G204240 NA non-coding NC_035920.1 CM008323.1 9214907 ~ 9215263 (-)