G204240


Basic Information

Item Value
gene id G204240
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 9214907 ~ 9215263 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277072
cacactgcactgacacacaaggacaattactgtacaaacacggtcactttacccgcactgagacacttattttctactgctctaattcatttcatgctgctatagcacatttgcactctggacttgttgctgcaacctgtctactctttctatttatttcattttggggtatttatctttaactattttgtatattctatttttattgtattcctttattgtacttttatctatatatctattaataacagctcttgggtgtaaactggatcgtgagatcacaatttcgttccacctcatgtaccacataagatgcgaatgacaataaaatctccttgaatccttgaatccttgaat

Function

NR:

description
Cytoskeleton-associated protein 5, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277072 True 357 lncRNA 0.35 1 9214907 9215263

Neighbor

gene id symbol gene type direction distance location
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding downstream 139512 9026626 ~ 9075395 (-)
LOC103033058 gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477 coding downstream 220451 8905523 ~ 8994456 (-)
guf1 guf1 coding downstream 366729 8840463 ~ 8848178 (-)
LOC103033398 LOC108431116 coding downstream 426204 8768529 ~ 8788703 (-)
cenpu NA coding downstream 467835 8737654 ~ 8747072 (-)
pcgf1 pcgf1,LOC107589114,LOC107678659,LOC107705480,LOC107660820,LOC107710472 coding upstream 376760 9592023 ~ 9603124 (-)
LOC103046764 fgf24,LOC103046764,LOC108431102,LOC107678645,LOC107660805,LOC108268415,LOC107559274,LOC107710462 coding upstream 466169 9681432 ~ 9699163 (-)
tlx2 tlx2,LOC107705478,LOC107589150 coding upstream 554424 9769687 ~ 9787999 (-)
LOC103032746 LOC108416976 coding upstream 654987 9870250 ~ 9878549 (-)
loxl3 loxl3,loxl3a,LOC107758510,LOC107589109 coding upstream 692954 9908217 ~ 9948824 (-)
G204239 NA non-coding downstream 32637 9181964 ~ 9182270 (-)
G204235 NA non-coding downstream 50942 9163643 ~ 9163965 (-)
G204227 ap1ar,LOC106611615,LOC106604579,LOC107678622 non-coding downstream 71090 9138533 ~ 9143817 (-)
G204222 NA non-coding downstream 109827 9104868 ~ 9105080 (-)
G204219 NA non-coding downstream 147786 9060218 ~ 9067121 (-)
G204242 NA non-coding upstream 21188 9236451 ~ 9236671 (-)
G204243 NA non-coding upstream 47000 9262263 ~ 9277665 (-)
LOC111195839 NA non-coding upstream 368755 9584018 ~ 9585591 (-)
G204277 NA non-coding upstream 390315 9605578 ~ 9605919 (-)
G204325 LOC105893757,LOC107661837,LOC103045037,LOC108269062,LOC108258863,LOC107587400,LOC103372308 non-coding upstream 593837 9809100 ~ 9907505 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 1471335 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 2422916 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2540979 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2682378 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2683239 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 508139 9723402 ~ 9759067 (-)
G204584 NA other upstream 1428991 10644254 ~ 10644687 (-)
G204671 NA other upstream 2367937 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 4518450 13733713 ~ 13739921 (-)
G205375 NA other upstream 4529090 13744353 ~ 13777621 (-)

Expression


Co-expression Network