LOC103033058 (gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477)


Basic Information

Item Value
gene id LOC103033058
gene name gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8905523 ~ 8994456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683544.1
gtgtgtgtgatattgtCGGCTTGGGCTGTCCGCGTGAGGAGGAGAGGTGGTGCCGCCGCGCGCTTCGTTACCGACACATTTCGTGCAACACTTTTGTGTTGAAGCGTCTCGCCGATGGGAATGTATTAACGGTCAATTACCGTCAAGTCCGCGCGGCTTTCAGTCCAGTTGTGGTGAGCGGCTGTGTGGATTGGTTTGGACTGGGAGGAACTTCACCAGTCACCAGTGCTCGGTGTTATACTGGCCGTACTGGTGAGCGGAGGACGGACGCGCAGCTGGACCATCAGGTGTGACTGATCAGAGATGAGGGGAAGACTCTTCATATTCCACGCGCTGGCCGTCTGTATCATCTTAACGTTGTTTTGGCGCGCGAGGTCAGTAACTGCAGATACCACAACAGATGCCTTCAAAAACAACATCACCCTCTTCACGCGCATCCTGGACCGGCTGCTGGATGGCTACGATAACCGGCTCAGACCTGGACTCGGAGATCGAGTCACCACAGTCAAGACTGACATCTATGTCACCAGTTTTGGACCTGTTTCAGACACAGATATGGAGTACACAATAGACGTGTTCTTCAGGCAGAGCTGGAAAGACGAGAGGTTGAAGTTCGAGGGACCAATGAACATTCTGCGTCTGAACAACCTGATGGCCAGTAAAATCTGGACTCCAGACACTTTCTTTCACAATGGAAAGAAATCTGTGGCGCACAACATGACCATGCCTAACAAGCTGCTACGCATCCAGGATGATGGCACATTGCTGTATACTATGAGGTTAACAGTACATGCAGAGTGTCCAATGCATCTGGAAGATTTCCCCATGGATTTCCACTCCTGTCCTCTGAAATTTGGCAGCTACGCATACACGATGACAGAGGTGACGTACACCTGGACGAAGAACGCTTCAAACtctgtggtggtggagggggaGAGCTCCCGGTTAAACCAGTACGATTTACTGGGACAGACTGTAGGGAATGAAACCATCAAATCCAGCACAGGCGAGTACACAGTAATGACTGCCCACTTCCATCTGAAGAGGAAGATTGGATATTTTGTGATTCAGACGTACCTGCCCTGCATCATGACAGTCATCCTCTCCCAGGTGTCCTTCTGGCTCAATCGAGAGTCTGTGCCTGCCCGGACTGTGTTTGGCGTGACCACTGTGCTGACCATGACCACTCTAAGTATCAGTGCCCGCAACTCCCTGCCTAAAGTGGCCTACGCTACAGCCATGGACTGGTTCATTGCCGTGTGCTACGCATTCGTCTTCTCCGCCCTCATCGAATTCGCTACTGTCAACTACTTCACCAAGCGTGGCTGGGCCTGGGACGGCAAGAGCGTGGTCAATGACAAGAAAAAGGAGAAAGCCTCAGTGATTAAGAAAAACAATGCCTACGCCGTGGCGGTGGCTAACTACGCTCCCAACATCACCAAGGACTCGGTCCTGCCCACCATCGCTAAAGGCGGAATAGCAGAACCGGGCAAGAACAAAACCGAGGCCAAACCAGTCGAGAACAAGAAGTCCTTCAACAGCGTGAGCAAGATCGACCGCATGTCCCGCATCATGTTCCCCGTACTCTTCGGATCCTTTAACCTGGTCTACTGGGCCACCTATCTAAACAGAGAACCCGTTATCAAAGATATGGTCCCGTCCAACCAGTAATTAGCAGAAGTAGCACTAAAGATCCAGCGATCAGGACTACAGTGAAAGCCAAAAAACATCCAGGGACTCCATCCAATCATTTCCGTACGCAAAGCAGTTCATCGATTATTACAGACCACCGAGCCATGGATCGTTGCAGGACacgcctctctttctctttcctctcttttctaCACCGTTTTCTGCAGTGCTTTTGAAATGACATTGGCCtttgtaaatatgtatttatggaTAAATGTATATGCCTTGTatgtccttctttctttctttctttctttctatctttcttattcagttattaatttCTCGTTTGTTAACGTATGGTTTAGCGTGTGTGCATTTCGCCGTTCcgtgagcttttttttttccagtgttttttttttttcatagggTTTCCCTGAAATATGACTTTTGAATCTGACCTTTTTTCTGTGACTAGGCTAGGTTTATCGTAGTGTAAAGTATTATATGAAATAgttgatttatttttgattattaacagtttatttctCTATCTGTTGTATATGTTGCCTTTTTGTAATGGTGCTTGTTTTGACCACTACTTTTTCAAGACCGAATCAAGACCAGTAAGTGATtcactgatgatgatgatgatgatgatttccCAAGAAGCTGGAAAACCTCCCGTTTGTGAGGTAATTCATgtaatttgttcatttaaacCGTAATGAAcgtcattattattaaattgagAATGTGAAAGCACTGACTTTTCAACAAGCCTCAACCAGTCCACTGAACACACTAAGAGTTGAGATcaggcttttattattatattattatacatcaaTGTATCAAAGGGCATCATTAGCCTTAACTGTTTATAACCCATGTTGTGTAAATCTGTTATATACAGTCTGttatatacaattaaataatgtattggTTGTTTCATTGGAAATATCTTTATTTACAACTATTTTTTCACCATTCAGGCAGAAAAAGAAGTATAAAACATGTTAACAgtgttagtattattattattattgacatgtatctgttttttattcatttttattttatatcggATTGTTTAATTTCTTCATTTCATGGCTGGTTGTGCTTTAGCTTGTTTGTTAAATGAGGGGAATAAGGATttggttgttgtttttattattattattattattattatttttttttttttgcctgcgttcaattttacactattaaatcttaaaaaactataattcttttctttttttgattcGATTTGACTTCAGTGGCTTAATGTGGACCAAAACACCTACAAGTGCTTCAAATAATGCATGTTTACCAGAGCTGTTTACCCTCTATACCGAagttgaatattttttatatttctttatttatgtcTATAAATTTGTGTCTTTGATAAACGTTCCAGTGAAAGTCAACAAAGAGCTTTTTATCAACACAGGAGTTAATTTCCACATGaattatgatataaaatattaaatataaagatacgAATCTTTCTTCACACACAGTATTGGTGTTGTAGCCCTGTGCACGATGTACCATGGATTTATGGTGTCTGTGCAGATCTGTAAAGTTGCGTTTTGGTTGGTTTTCATTTCTAACAGCATTataagcattattattttaattgaaggGTATGTTGAAATTATCAAAGCAtgcagtatttttatattattatcatctttttttttttggctgtaagACGAAATGGCAGATCTCTCTGAAATGGcataaaacacatttagaaGTTTGCATGAAATCACAAATTTAATTTAtcgattatttatttatttatttatttatttatttatttatttactgcattTTGATAGTGGTCAGAATGTATGTAGGtatctatgtatttatttattcatttatttctatatatatattatatatatataaattgttaaTTTAACTCTTGTGTGTCTTTGATgtcctaatgttttttttgtttgtttgttttttttcatttctgtctAAATCTGGATCACGAGTCGAGTTTTTTCTATATCAAGCACTGCTCTAACTTTCTCATCTCAGCTCTCAACGTGTACCACATCATGCGTCATGGTTATGCAGAAACATGTCTGAGCAATAAAAAGCGACTAAAGAGTGAAGTGAATAATTGCATTGCTGGTTGCAGCTGCACGTGTATGGAATGTAATAacactttgtaaaaaaaaaaaagctcattcaGATGTTTCATTTTCCTGTAGATAGACGTGTACAATCTCAGAGGaagtgttcatttatttattgactaTGGACTGGTGTtcataaaaagacaaaagatgacgaaaatgttttttttatgtattttttttttttgtttttaattttctggaattttctgtgtttaaactgacagtatttagtattttattatcagtattattCTAATTCTCACTATTATTTTCTGTTGGGGGACTGAAGGTGCACCAGTATGCTGTATGTTCCTTTAAACTCAGACTTCTCAGACTCAGCTTGGCTCTTTCTGATGCCAGTATTCATACATAATGTATTGGACAAGGTTTACAGGTGACCAATTTCAACTGTTCCCCTCTGCTGCTGGGTTTACAGTATGTTTTGAATAGTGATATTTGCTCTTTCATTCCTGTTCCTCTTTCAACAGCTTCTTGCTTAATAAAAGAACAGAATACATCTTGTCA
>XM_022683545.1
gtgtgtgtgatattgtCGGCTTGGGCTGTCCGCGTGAGGAGGAGAGGTGGTGCCGCCGCGCGCTTCGTTACCGACACATTTCGTGCAACACTTTTGTGTTGAAGCGTCTCGCCGATGGGAATGTATTAACGGTCAATTACCGTCAAGTCCGCGCGGCTTTCAGTCCAGTTGTGGTGAGCGGCTGTGTGGATTGGTTTGGACTGGGAGGAACTTCACCAGTCACCAGTGCTCGGTGTTATACTGGCCGTACTGGTGAGCGGAGGACGGACGCGCAGCTGGACCATCAGCTGCTTTGTGTGTCCAGGTGTGACTGATCAGAGATGAGGGGAAGACTCTTCATATTCCACGCGCTGGCCGTCTGTATCATCTTAACGTTGTTTTGGCGCGCGAGGTCAGTAACTGCAGATACCACAACAGATGCCTTCAAAAACAACATCACCCTCTTCACGCGCATCCTGGACCGGCTGCTGGATGGCTACGATAACCGGCTCAGACCTGGACTCGGAGATCGAGTCACCACAGTCAAGACTGACATCTATGTCACCAGTTTTGGACCTGTTTCAGACACAGATATGGAGTACACAATAGACGTGTTCTTCAGGCAGAGCTGGAAAGACGAGAGGTTGAAGTTCGAGGGACCAATGAACATTCTGCGTCTGAACAACCTGATGGCCAGTAAAATCTGGACTCCAGACACTTTCTTTCACAATGGAAAGAAATCTGTGGCGCACAACATGACCATGCCTAACAAGCTGCTACGCATCCAGGATGATGGCACATTGCTGTATACTATGAGGTTAACAGTACATGCAGAGTGTCCAATGCATCTGGAAGATTTCCCCATGGATTTCCACTCCTGTCCTCTGAAATTTGGCAGCTACGCATACACGATGACAGAGGTGACGTACACCTGGACGAAGAACGCTTCAAACtctgtggtggtggagggggaGAGCTCCCGGTTAAACCAGTACGATTTACTGGGACAGACTGTAGGGAATGAAACCATCAAATCCAGCACAGGCGAGTACACAGTAATGACTGCCCACTTCCATCTGAAGAGGAAGATTGGATATTTTGTGATTCAGACGTACCTGCCCTGCATCATGACAGTCATCCTCTCCCAGGTGTCCTTCTGGCTCAATCGAGAGTCTGTGCCTGCCCGGACTGTGTTTGGCGTGACCACTGTGCTGACCATGACCACTCTAAGTATCAGTGCCCGCAACTCCCTGCCTAAAGTGGCCTACGCTACAGCCATGGACTGGTTCATTGCCGTGTGCTACGCATTCGTCTTCTCCGCCCTCATCGAATTCGCTACTGTCAACTACTTCACCAAGCGTGGCTGGGCCTGGGACGGCAAGAGCGTGGTCAATGACAAGAAAAAGGAGAAAGCCTCAGTGATTAAGAAAAACAATGCCTACGCCGTGGCGGTGGCTAACTACGCTCCCAACATCACCAAGGACTCGGTCCTGCCCACCATCGCTAAAGGCGGAATAGCAGAACCGGGCAAGAACAAAACCGAGGCCAAACCAGTCGAGAACAAGAAGTCCTTCAACAGCGTGAGCAAGATCGACCGCATGTCCCGCATCATGTTCCCCGTACTCTTCGGATCCTTTAACCTGGTCTACTGGGCCACCTATCTAAACAGAGAACCCGTTATCAAAGATATGGTCCCGTCCAACCAGTAATTAGCAGAAGTAGCACTAAAGATCCAGCGATCAGGACTACAGTGAAAGCCAAAAAACATCCAGGGACTCCATCCAATCATTTCCGTACGCAAAGCAGTTCATCGATTATTACAGACCACCGAGCCATGGATCGTTGCAGGACacgcctctctttctctttcctctcttttctaCACCGTTTTCTGCAGTGCTTTTGAAATGACATTGGCCtttgtaaatatgtatttatggaTAAATGTATATGCCTTGTatgtccttctttctttctttctttctttctatctttcttattcagttattaatttCTCGTTTGTTAACGTATGGTTTAGCGTGTGTGCATTTCGCCGTTCcgtgagcttttttttttccagtgttttttttttttcatagggTTTCCCTGAAATATGACTTTTGAATCTGACCTTTTTTCTGTGACTAGGCTAGGTTTATCGTAGTGTAAAGTATTATATGAAATAgttgatttatttttgattattaacagtttatttctCTATCTGTTGTATATGTTGCCTTTTTGTAATGGTGCTTGTTTTGACCACTACTTTTTCAAGACCGAATCAAGACCAGTAAGTGATtcactgatgatgatgatgatgatgatttccCAAGAAGCTGGAAAACCTCCCGTTTGTGAGGTAATTCATgtaatttgttcatttaaacCGTAATGAAcgtcattattattaaattgagAATGTGAAAGCACTGACTTTTCAACAAGCCTCAACCAGTCCACTGAACACACTAAGAGTTGAGATcaggcttttattattatattattatacatcaaTGTATCAAAGGGCATCATTAGCCTTAACTGTTTATAACCCATGTTGTGTAAATCTGTTATATACAGTCTGttatatacaattaaataatgtattggTTGTTTCATTGGAAATATCTTTATTTACAACTATTTTTTCACCATTCAGGCAGAAAAAGAAGTATAAAACATGTTAACAgtgttagtattattattattattgacatgtatctgttttttattcatttttattttatatcggATTGTTTAATTTCTTCATTTCATGGCTGGTTGTGCTTTAGCTTGTTTGTTAAATGAGGGGAATAAGGATttggttgttgtttttattattattattattattattatttttttttttttgcctgcgttcaattttacactattaaatcttaaaaaactataattcttttctttttttgattcGATTTGACTTCAGTGGCTTAATGTGGACCAAAACACCTACAAGTGCTTCAAATAATGCATGTTTACCAGAGCTGTTTACCCTCTATACCGAagttgaatattttttatatttctttatttatgtcTATAAATTTGTGTCTTTGATAAACGTTCCAGTGAAAGTCAACAAAGAGCTTTTTATCAACACAGGAGTTAATTTCCACATGaattatgatataaaatattaaatataaagatacgAATCTTTCTTCACACACAGTATTGGTGTTGTAGCCCTGTGCACGATGTACCATGGATTTATGGTGTCTGTGCAGATCTGTAAAGTTGCGTTTTGGTTGGTTTTCATTTCTAACAGCATTataagcattattattttaattgaaggGTATGTTGAAATTATCAAAGCAtgcagtatttttatattattatcatctttttttttttggctgtaagACGAAATGGCAGATCTCTCTGAAATGGcataaaacacatttagaaGTTTGCATGAAATCACAAATTTAATTTAtcgattatttatttatttatttatttatttatttatttatttactgcattTTGATAGTGGTCAGAATGTATGTAGGtatctatgtatttatttattcatttatttctatatatatattatatatatataaattgttaaTTTAACTCTTGTGTGTCTTTGATgtcctaatgttttttttgtttgtttgttttttttcatttctgtctAAATCTGGATCACGAGTCGAGTTTTTTCTATATCAAGCACTGCTCTAACTTTCTCATCTCAGCTCTCAACGTGTACCACATCATGCGTCATGGTTATGCAGAAACATGTCTGAGCAATAAAAAGCGACTAAAGAGTGAAGTGAATAATTGCATTGCTGGTTGCAGCTGCACGTGTATGGAATGTAATAacactttgtaaaaaaaaaaaagctcattcaGATGTTTCATTTTCCTGTAGATAGACGTGTACAATCTCAGAGGaagtgttcatttatttattgactaTGGACTGGTGTtcataaaaagacaaaagatgacgaaaatgttttttttatgtattttttttttttgtttttaattttctggaattttctgtgtttaaactgacagtatttagtattttattatcagtattattCTAATTCTCACTATTATTTTCTGTTGGGGGACTGAAGGTGCACCAGTATGCTGTATGTTCCTTTAAACTCAGACTTCTCAGACTCAGCTTGGCTCTTTCTGATGCCAGTATTCATACATAATGTATTGGACAAGGTTTACAGGTGACCAATTTCAACTGTTCCCCTCTGCTGCTGGGTTTACAGTATGTTTTGAATAGTGATATTTGCTCTTTCATTCCTGTTCCTCTTTCAACAGCTTCTTGCTTAATAAAAGAACAGAATACATCTTGTCA

Function

symbol description
gabra2 Enables GABA-gated chloride ion channel activity and benzodiazepine receptor activity. Involved in several processes, including chloride transmembrane transport; gamma-aminobutyric acid signaling pathway; and neurotransmitter transport. Is integral component of synaptic vesicle membrane. Part of GABA-A receptor complex. Implicated in alcohol use disorder; autistic disorder; and developmental and epileptic encephalopathy 78.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-2-like

GO:

id name namespace
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683544.1 False 4325 mRNA 0.39 10 8905523 8994456
XM_022683545.1 True 4342 mRNA 0.39 10 8905523 8994456

Neighbor

gene id symbol gene type direction distance location
guf1 guf1 coding downstream 57345 8840463 ~ 8848178 (-)
LOC103033398 LOC108431116 coding downstream 116820 8768529 ~ 8788703 (-)
cenpu NA coding downstream 158451 8737654 ~ 8747072 (-)
LOC103025383 NA coding downstream 191204 8703958 ~ 8714319 (-)
irf2 irf2 coding downstream 203242 8677122 ~ 8702281 (-)
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding upstream 32170 9026626 ~ 9075395 (-)
pcgf1 pcgf1,LOC107589114,LOC107678659,LOC107705480,LOC107660820,LOC107710472 coding upstream 597567 9592023 ~ 9603124 (-)
LOC103046764 fgf24,LOC103046764,LOC108431102,LOC107678645,LOC107660805,LOC108268415,LOC107559274,LOC107710462 coding upstream 686976 9681432 ~ 9699163 (-)
tlx2 tlx2,LOC107705478,LOC107589150 coding upstream 775231 9769687 ~ 9787999 (-)
LOC103032746 LOC108416976 coding upstream 875794 9870250 ~ 9878549 (-)
G204178 NA non-coding downstream 80132 8795301 ~ 8825391 (-)
G204078 NA non-coding downstream 389148 8515842 ~ 8516375 (-)
G204066 NA non-coding downstream 477973 8425387 ~ 8427550 (-)
G204032 NA non-coding downstream 694704 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 747752 8156629 ~ 8157771 (-)
G204217 NA non-coding upstream 24450 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 65762 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 71153 9065609 ~ 9066693 (-)
G204222 NA non-coding upstream 110412 9104868 ~ 9105080 (-)
G204227 ap1ar,LOC106611615,LOC106604579,LOC107678622 non-coding upstream 144077 9138533 ~ 9143817 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 1161951 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 2113532 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2231595 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2372994 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2373855 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 728946 9723402 ~ 9759067 (-)
G204584 NA other upstream 1649798 10644254 ~ 10644687 (-)
G204671 NA other upstream 2588744 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 4739257 13733713 ~ 13739921 (-)
G205375 NA other upstream 4749897 13744353 ~ 13777621 (-)

Expression


Co-expression Network