LOC103025383


Basic Information

Item Value
gene id LOC103025383
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8703958 ~ 8714319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247471.2
GAACGCGCACCGGTGACTTGTCCGGTCAGCTTCCACCTCCAAGTCCAAGTTAAACAGCCGGAGAACTTCAGGCTTCACTTCCtgattaaaacagcactttAGACAATGGCAGACGAGGAGAATGGTAGTAAAGCAGCAGAAGGAGGCGACTCTGTGGATGCCAAGGCATCCAACCCTAAAGGGTCTGAGACTGTTCACACTGCATCTGTTCCTGCCAAAAGCAAAGCTCCTGTTGATATGTTCAGATACCGCATGGACTACCCCAACCTTGGTAAATGTATCATCATCAACAACAGGAATTTTGACCGGTCTACAGGGATGTCAGATCGGGCCGGAACAGATGTGGACGCTGGGAAAATGCTGAAAGTCTTCAGTGAACTGGGTTTCAAAGCGTCAGTCCAAAATAATCGAACTGTTTCGCAAATGAGGCAGATTTTAACATCAGCGTCCAAGGAGGACCACAGCAAGTCGGCCATGTTTGTCTGTGTCATGCTGAGTCATGGCGATGAAGGAACCATCTTTGGGACAGATGGATGCATGGAGCTGAAGGAGCTGACTAGACTGTTCCGAGGAAACCAGTGCCCGTCTCTAGCTGGGAAACCTAAACTCTTCTTTATACAGGCGTGTCGTGGATCAGAGCTGGACCCCGGCATTGAGACTGACAGTGTTGATGATTCAGAGGGCACACATAAGATTCCTGTTGAGGCAGACTTCTTATACGTGTACTCCACTGCCCCAGGTTACTACTCATGGAGAAACACAGCAAACGGATCCTGGTTCATATCCTCCCTGTGTGAGATGCTGGCTAAATACGGCAGAGAGCTGGAGATTATGCAGATCATGACACGTGTGAACCACAAGGTGGCACTAGAGTTTGAGTCTTCCTCCAACACGCCAGGCTTTAATGCTATGAAACAAATACCCTGCATTATGTCCATGCTGACCAAAGAGCTGTACTTCCCAAAGTGACTGATAGTTTCTAAGTAAATGAAATCTATTTAGCAGGTTTTTCTATAGAAAGGTCTTAGTTAGAGGTTGATAGAGGTTTGATTGACACTTTGATTGGGCACAGTGGTCAGAAACAGGGGCCAACATGGACATTCCAAATATTAGCACAACAATaacgtttttgtattttttgtttttacaaccGTTTACAGATTTATTTGTAACCCCTAGGAAACTCTTAGGCAAATtgatttaaatatgatttataaagaTCTATTTAAGGAATTTAAGGTCTAGCCttatatttttgcaaataaactCAGGGacattaaataaactttttaaaccacacacttttttttttttattgctcacTTTAACGGGTCTTTGCAGGGCATGCTCTTTGCATGCTTTTAatcaaagttaaataaaaatgtattttctttgatATGAAAAGGcatgtgtttctttttaaagttttaaaacatgACTCAGAACACATTAAATTCTGTTATTGCACCATAACTAAATAggaattttgtttttaatgccaCCCTCTGGGGTACAATCCCCAAAATGTGTTAACATACGGCCCCACAGAGTAAATGATCTCCTGTGGTGAAAGTACACAGCCTGCAAAGATCCATGTCTGCACAGAACAGAAAGCAGAAGCACTCACACGTCACAGCCAACAGTTTCATTTCCATTTCTTTCTGCAAGTATCGACTTGCACTATGTTGtgtaatctgtaaaaaaaaaaaaaaaaaacattaatgagaCACAACTGTACACTGTAGTACAGTTCTAGCAATGCAtgataatgtgtaataatgtgtgttcAAATTCTGCTTTCAAGGATCTGCTGCAGCACACCACACCATTACCAGGGAGTTGCTGGGTGTGACTCTCTAGATAAGGCTCGAGGAAGAGAGTGTGTGCGGCCAGACTAAGCTAATTAGACTGTTGGGGTCATATTGCAATAAAGCACTcttatgtagtgtagtgtgataAGTTTGCCTTATCTAGAACAGCGGCGCTGTACATGTGAGAGTGATTGCAACATTATTATTGATGCAATTAAAAGAGGATAGCTGTAAAA
>XM_022683540.1
GAACGCGCACCGGTGACTTGTCCGGTCAGCTTCCACCTCCAAGTCCAAGTTAAACAGCCGGAGAACTTCAGGCTTCACTTCCtgattaaaacagcactttAGACAATGGCAGACGAGGAGAATGGTAGTAAAGCAGCAGAAGGAGGCGACTCTGTGGATGCCAAGGCATCCAACCCTAAAGGGTCTGAGACTGTTCACACTGCATCTGTTCCTGCCAAAAGCAAAGCTCCTGTTGATATGTTCAGATACCGCATGGACTACCCCAACCTTGGTAAATGTATCATCATCAACAACAGGAATTTTGACCGGTCTACAGGGATGTCAGATCGGGCCGGAACAGATGTGGACGCTGGGAAAATGCTGAAAGTCTTCAGTGAACTGGGTTTCAAAGCGTCAGTCCAAAATAATCGAACTGTTTCGCAAATGAGGCAGATTTTAACATCAGCGTCCAAGGAGGACCACAGCAAGTCGGCCATGTTTGTCTGTGTCATGCTGAGTCATGGCGATGAAGGAACCATCTTTGGGACAGATGGATGCATGGAGCTGAAGGAGCTGACTAGACTGTTCCGAGGAAACCAGTGCCCGTCTCTAGCTGGGAAACCTAAACTCTTCTTTATACAGGCGTGTCGTGGATCAGAGCTGGACCCCGGCATTGAGACTGACAGTGTTGATGATTCAGAGGGCACACATAAGATTCCTGTTGAGGCAGACTTCTTATACGTGTACTCCACTGCCCCAGGTTACTACTCATGGAGAAACACAGCAAACGGATCCTGGTTCATATCCTCCCTGTGTGAGATGCTGGCTAAATACGGCAGAGAGCTGGAGATTATGCAGATCATGACACGTGTGAACCACAAGGTGGCACTAGAGTTTGAGTCTTCCTCCAACACGCCAGGCTTTAATGCTATGAAACAAATACCCTGCATTATGTCCATGCTGACCAAAGAGCTGTACTTCCCAAAGTGACTGATAGTTTCTAAGTAAATGAAATCTATTTAGCAGGTTTTTCTATAGAAAGGTCTTAGTTAGAGGTTGATAGAGGTTTGATTGACACTTTGATTGGGCACAGTGGTCAGAAACAGGGGCCAACATGGACATTCCAAATATTAGCACAACAATaacgtttttgtattttttgtttttacaaccGTTTACAGATTTATTTGTAACCCCTAGGAAACTCTTAGGCAAATtgatttaaatatgatttataaagaTCTATTTAAGGAATTTAAGGTCTAGCCttatatttttgcaaataaactCAGGGacattaaataaactttttaaaccacacacttttttttttttattgctcacTTTAACGGGTCTTTGCAGGGCATGCTCTTTGCATGCTTTTAatcaaagttaaataaaaatgtattttctttgatATGAAAAGGcatgtgtttctttttaaagttttaaaacatgACTCAGAACACATTAAATTCTGTTATTGCACCATAACTAAATAggaatttTGTTAACATACGGCCCCACAGAGTAAATGATCTCCTGTGGTGAAAGTACACAGCCTGCAAAGATCCATGTCTGCACAGAACAGAAAGCAGAAGCACTCACACGTCACAGCCAACAGTTTCATTTCCATTTCTTTCTGCAAGTATCGACTTGCACTATGTTGtgtaatctgtaaaaaaaaaaaaaaaaaacattaatgagaCACAACTGTACACTGTAGTACAGTTCTAGCAATGCAtgataatgtgtaataatgtgtgttcAAATTCTGCTTTCAAGGATCTGCTGCAGCACACCACACCATTACCAGGGAGTTGCTGGGTGTGACTCTCTAGATAAGGCTCGAGGAAGAGAGTGTGTGCGGCCAGACTAAGCTAATTAGACTGTTGGGGTCATATTGCAATAAAGCACTcttatgtagtgtagtgtgataAGTTTGCCTTATCTAGAACAGCGGCGCTGTACATGTGAGAGTGATTGCAACATTATTATTGATGCAATTAAAAGAGGATAGCTGTAAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K02187 CASP3; caspase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247471.2 True 2047 mRNA 0.42 8 8703958 8714319
XM_022683540.1 False 2007 mRNA 0.42 9 8703958 8714319

Neighbor

gene id symbol gene type direction distance location
irf2 irf2 coding downstream 1677 8677122 ~ 8702281 (-)
enpp6 enpp6 coding downstream 36717 8652410 ~ 8667241 (-)
snx25 snx25,LOC107556844 coding downstream 55256 8575970 ~ 8648702 (-)
fnta fnta,LOC107678656,LOC107715177,LOC106604549 coding downstream 137926 8556398 ~ 8566032 (-)
LOC103028028 NA coding downstream 457008 8230091 ~ 8246950 (-)
cenpu NA coding upstream 23335 8737654 ~ 8747072 (-)
LOC103033398 LOC108431116 coding upstream 54210 8768529 ~ 8788703 (-)
guf1 guf1 coding upstream 126144 8840463 ~ 8848178 (-)
LOC103033058 gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477 coding upstream 191204 8905523 ~ 8994456 (-)
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding upstream 312307 9026626 ~ 9075395 (-)
G204078 NA non-coding downstream 187583 8515842 ~ 8516375 (-)
G204066 NA non-coding downstream 276408 8425387 ~ 8427550 (-)
G204032 NA non-coding downstream 493139 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 546187 8156629 ~ 8157771 (-)
G204022 NA non-coding downstream 637520 8066151 ~ 8066438 (-)
G204178 NA non-coding upstream 80982 8795301 ~ 8825391 (-)
G204217 NA non-coding upstream 304587 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 345899 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 351290 9065609 ~ 9066693 (-)
G204222 NA non-coding upstream 390549 9104868 ~ 9105080 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 960386 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 1911967 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2030030 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2171429 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2172290 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 1009083 9723402 ~ 9759067 (-)
G204584 NA other upstream 1929935 10644254 ~ 10644687 (-)
G204671 NA other upstream 2868881 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 5019394 13733713 ~ 13739921 (-)
G205375 NA other upstream 5030034 13744353 ~ 13777621 (-)

Expression


Co-expression Network