LOC103033398 (LOC108431116)


Basic Information

Item Value
gene id LOC103033398
gene name LOC108431116
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8768529 ~ 8788703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684320.1
ATGGTCAGGGACAGGGAGCGTATTCTGGGGGACAGGAAGTCGAATCGCTCGGACGATGGCAGCCAGCAGCAGTTTCCAGTGAAGGAGACGGTGGAGGTGATCAGAGACGCTGTGCTGGACTCCCACGGCTTCACCCTCACCACACAGCTCCCTCTGCTGGTCAGGGATGTCACTCCAGGAGGACCAGCAGATGGTCGTCTTTTACCTGGTGACCAAGTGCTAAAAGTCAACAATAAAGCCATAGAGGACCTGTCTCCGGAAAATGTGGAGCACATGATCAGGGACTGCCAGGACTCTGTTACCATGACGGTCCTCAGAAACATGCTGAACCCCAAGTCCTCATTCATGAGTGCGGAGAAGAGAGCTCGCCTGAGAAGAAATCCAGTTAAAGTGCGCTTTGCAGAGGAGGTGGTCGTTAACGGACACACTCAGGGAAACTCTCTTCTCTTCCTGCCCAATGTGCTGAAGGTCTACCTGGAAAACGGACAGACCAAAGCCTTCAAATTTGATAAAACCACCTCTGTCAAGGACATAGTGCTGACTCTGAAGGAGAAGCTGTCGATTCGCTCGATTGAGCATTTCTctctggtgctggagcagcaatacAGCATCACCAAGCTCCTGTTACTGCACGAAGACGAGCTCATACAGAAGGTGGTGCAGAAGAAGGACTCTCATGATTACAGGTGTTTGTTCAGAGTGTGTTTCATCCCTCGAGACCCTGTGGATCTGCTGCACGATGACCCAGTAGCCTTTGAATACCTCTTCCACCAGAGTGTAGGGGACGTGTTGCAGGAGCGGTTTGCAGTAGAGATGAAATGCAACACTGCTTTAAGGCTGGCAGCGCTGCACATGCATGAAAGAATGGCCAGCTGTGGACAAACCACAAGAGCATCTGTCAAGGGCATCATTAAGGAGTTTGGTATGGAGAGCTTTATTTCACCTACGTTACTGAGGaacatgagagagaaagacctGAGAAAAGCACTTACAGGACACATGAAgaagatccaatcactgctggAGCCTCGCCAGAAAGTTATCTCTGTACCTCAGGCCAGGTTGGCATATCTGACTCAGATGGCAGAGCTGATTTCATACAGTGGGAGATCCTACAACGCCACCATGCTGCTGCAGGACCGGGAGTCCTTGGTGAGTTTGCTGGTGGGAGCACGGTATGGCGTCAGTCAGATCCTAAACCACAAGCTCAACATGATTTCCACCATCATAGACTTCCATTACATCACCCGTGTAGAGGTGCTCTCTGAATCTGACAGAGTCAGCATGCTAAAGATCTATCTGCATGACATCCAGCCACTGGCCTTGCTAATGGATTCAGTTGCTGCTAAGGACTTAGCCTGTCTGCTGGCTGGCTACTGCAGACTGTTGGTGGATCCTAACATGAACGTGTTCCGTTGGGGCCCTCGCCCCAAAATGCGCCGAATACCTTTAGATGAAGGCTATGGATTCCGCTGTGGCAGTGACTCAGATTTGAGTTCAGATGAGGATTACTCCATGGACAACGTGCTGGACGCTCAACATTCGGAAGACACGGCGTCAACGCATACAAATGACGGAAAGGAAGATGAGAAGGTTCAAGAGAATAAACAGAAGGCCACGGTGGAGACGGTACGAGTGTTTGTGACTCATGCGGAAGAAGGAAATAAAGCAGCGGAAGGTGGTCTAGATGGGACGAGTATAAGTGGCTCGGTTGAAGATGAGGACTATGCAGCCCGGGTTAATGCACTTCTGGAGACAGGCTGGTATACTGACCCGAGGGTCAATAGCAGCTTCTCGAGTCTGTCGAGTAACTCCCTGAATGCTCTGGAAGAGAGTTGTCGGGCGTCCACTGCAGGAGCTACTCAATTGGACAATTTTAAGGAGGAGGCACTCACACCAGATCAGGCTGCTGGGACTAGCCTTGATGTCCATCATCCGTACTTATTAGAGGTGCCTGAACGCCACCGGAAAGAGGATTCGGACACCCCGGTACGACCCGGTGACTTCTCCTACAACCGGAACCCAGGCTTGCGCTACACACAGCTCTCGCAAATGGCTGACTACCTCCCCAGCCCACCTGAAGCCAGCGACGATGCACTTAgtgatgaggatgaggagggtGCAGATGAGAACGGCAATGATAGACTCATTTCAGACATGTCTGCAGATCTTGAGGCTGTGTTGGCATCAGGTGGTAGCAATAGTATAAAAGGTACAGTAGCAGGTGTAGATGTTCAAGCACTTTTAGCAAGGATCCGCAGCCATCCAGCATGTCAGCAAGAATGGAGAAACCCTGGTGTCCTCCACAGACAGGAAATGAAATCGAGGGGGGCAATGGCCAGAGGAAAacctccacctcctcccccGCCTCCAAGAACAGTGTCTGTGAAGATGTGTAAGGACTACCGAGACAGTGGTACAGAATCAGAAGATGAATTCTTCGATGCCCAGGATCGTCTTACTCCACCAATCCTAGAACGCCCTGCAGAGAAAGACACAAAAGTGAGTATCAAAGATCGTGCCCAGAACATGAATGAGGTCAAGACCACTGTACAAGAGACAGCAACACATGAAGTCAAACAACTAAAGGAGACTTTAATCATCAATAAAAACAATCTAAAATCACCATCCCTTCTTAATCATCTCACTCCTGAAGCAACTGTTCTTGATAAACAAGAGTTTGAGGTTCATCAGCCCTCACTTACCATTCTCCCTCAACGGACGCTGCTCGAATCTAAGCCCATTGTGGATAATCATGTCTCAGAACAGGGCCAGCAGTGCAATGGAGATATTCCTGGCCGCAGTTCTCACCTATCCTCTGAGCTTTTAGAAATGGAGCCAGACACTATGGAATTTAAGCCTGTTACTACAGCTGGACCACCACTATCTTCACCCTTAATCAGGGCAGTGCGACAAGCTCAACCTCAGCCACCATCCCCAGCAGATCCTGCACTTGTGAATGGTTCCAAGCAGCAAAACCAAATTTCCAATCATGCCCCAGTCAATTTTGAACATACCAGCCACGTGAACCTCAATGACAAAGCCCCTGATTCCCAAAATGTTACAAAACCAACAGAAACTCCTGTGGATACAAAAGTTGAAACGTTTAAAATAGAGAATACAGCAGAAAACCAAtccaagaaagaagaaaagtctGTGGTCAAACCTCCAGTTCCCCCAAAACCCAAATCTGTTCGTTGTCAACCATCATCAGCCTCAGATATTATTGCTCATCCTTTacaaactgaaagcaaacaacATATACCACCAAACGGACTTTCCTTGCACCCCTGGTCCCAGCGGAACGGGACCACTCCAGCCCCTATTCTCAGTAAGGGTGTCTCACTGAGCCATGAGAATCTTAGAAGTGAACTAAAAACTGAGAACACTACTGTCAAAGGGACAAGTGCATCAACTACTCCAACTCCCACGTCCACCCCAGCGTTATCCCCGGCTGCTTCTATCAGAGGGTCTGTTAGCATGGACCCCAAAGATCCTTTTGGGATCGGGATGAGTTTACCAAGCAGAACGTCTTCTGGGCGTCTATCTGCTTCAGCACTGAGAGGAAAGATCCAAGATATGCCTTGGTATCTTACAAGATCACAAGAAATTTTGGGTACTATTGCACTGAGCGGAGATAAATCAACAGACACGAAAGAATCAAAGGAAGAGCACATGGAATCTAAGAAGGAATCACCAAAGGCCACTTCAGTACCTTCTTTGAACGACTGGAAAGAGAAAGATGCTGAAGTTGTCGTTGTGAAACTAAAAGATGGGCCACAAGAGGTGAGTTCTCTTGTAAAAGAGTCCagtgagatctctttatctgGTCTTCCAGATGTGAGGCAAAATGGGTTGCGAGACTCCATTGAACTCCTGTCGCACTTGGGAACGTGCAAGCTGGAACAGCCCCAGTCTCAAAAGGTCATTGGTACGCAGGATAGCTTTGAAACGCCCATGCCGGAATCAAGTCCCAGCACACCGCATCGGGAAGCTTGTGGATGTCATACTGTTTATGCCAACTGCTTCAGCGGGGATGCTGAAGATGTCTGTGGCTTTGATGACGAACTGACAGTGTATGAGTTCTCCCGTCAGAAACGAATCAGCAAACCACCACAGACTGCATGTACAGCTCCGTCATCCATCTGTGCCCCTTCGCCAAACATCCTGTCACTGCTCAGGGACTCTCCTCGTCCCCTGTCAACCTCTTCAGAGCTCAGCCCCCTTCTTACCCCACCCCGATCACTTGAGTCTCGACCGAAGGGGCGCTCCCCCCTGGACGATCCACTTCGGGACCTTCAGGGCAGGCGGTACCTGACAGGCCCAAAAGGTACAGGGCTTAAAGGGGGCTACACCTCCCTCCACAAAGACATAGACGAGCTTTTGTTGGTGCTTAAGAATGGAGAGACCGCAATAAATCCTCCATGCCACAAAGGGCAGTGTGAAAAGGGCAAGAACGGACACTCCTTTCCAGAAACGGAGCGCTGCCTGGTGCAGGCCGAGGCACGGAGGCTGGCGTCAGGATGCCAGCGTGCAACACGTGTCGGTTGGGCACCAGATGACGCCCTGCTCTCTCTAGGCAACAGCTTTGGAGCTCTGGTGCATCTGTCAGCGGCTTGCCTACGAGTttcctgctcagactgtgggggGTGCCATGGGGATATTGACGGAGCTGAAGCTCTAAGGAAGCTTCAGGAGATTGTGTGTCTGTACAAGGAGTTTGTGACGGCTGTGGAAACGGCCCAAGAGGCGGAAGGTGTTAGGCTCTTGGCCAAACAGTGCACGGTTCTAATCTCCTCAGTGTTCTCGCTCACACAGCTCTTCAGAACACATACGCCAGACACGGACAGTAGACACATACCTCTGAACTTTTGA

Function

NR:

description
PREDICTED: FERM and PDZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684320.1 True 4875 mRNA 0.50 15 8768529 8788703

Neighbor

gene id symbol gene type direction distance location
cenpu NA coding downstream 21457 8737654 ~ 8747072 (-)
LOC103025383 NA coding downstream 54210 8703958 ~ 8714319 (-)
irf2 irf2 coding downstream 66248 8677122 ~ 8702281 (-)
enpp6 enpp6 coding downstream 101288 8652410 ~ 8667241 (-)
snx25 snx25,LOC107556844 coding downstream 119827 8575970 ~ 8648702 (-)
guf1 guf1 coding upstream 51760 8840463 ~ 8848178 (-)
LOC103033058 gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477 coding upstream 116820 8905523 ~ 8994456 (-)
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding upstream 237923 9026626 ~ 9075395 (-)
pcgf1 pcgf1,LOC107589114,LOC107678659,LOC107705480,LOC107660820,LOC107710472 coding upstream 803320 9592023 ~ 9603124 (-)
LOC103046764 fgf24,LOC103046764,LOC108431102,LOC107678645,LOC107660805,LOC108268415,LOC107559274,LOC107710462 coding upstream 892729 9681432 ~ 9699163 (-)
G204078 NA non-coding downstream 252154 8515842 ~ 8516375 (-)
G204066 NA non-coding downstream 340979 8425387 ~ 8427550 (-)
G204032 NA non-coding downstream 557710 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 610758 8156629 ~ 8157771 (-)
G204022 NA non-coding downstream 702091 8066151 ~ 8066438 (-)
G204178 NA non-coding upstream 6598 8795301 ~ 8825391 (-)
G204217 NA non-coding upstream 230203 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 271515 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 276906 9065609 ~ 9066693 (-)
G204222 NA non-coding upstream 316165 9104868 ~ 9105080 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 1024957 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 1976538 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2094601 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2236000 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2236861 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 934699 9723402 ~ 9759067 (-)
G204584 NA other upstream 1855551 10644254 ~ 10644687 (-)
G204671 NA other upstream 2794497 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 4945010 13733713 ~ 13739921 (-)
G205375 NA other upstream 4955650 13744353 ~ 13777621 (-)

Expression


Co-expression Network